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Here's an overview of the work I'd like to do with @jdstamp to get this section together. I started writing it up as an email but figured I'd post it here for visibility.
- High-level goal: enumera…
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Hi there, thanks for this great tool!
About the demonstration of gwaslab, I have one little question about gwas analysis.
Certain gwas results may represent sproadic signals across whole genome, l…
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We've got two nice use cases of population and statistical genetics; a third use case that could attract users and contributors could be polygenic risk score computations.
I'm only glancingly famil…
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Various genetic statistical measures exist, as a first pass, try implementing the F_Statistic set. Scott sent me on a library, egglib, which includes a [module for such calculations](http://egglib.sou…
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We already have partial-SVD for computing only k-first eigenvals and randomized SVD thanks to @merajhashemi for fast approximation. Would be good to add incremental SVD when we want better approximat…
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I am currently going through the MiXeR tutorial, which I plan to implement in my current study.
When I ran the python mixer.py ld and python mixer.py snp codes to generate.ld and.snp files, I kept …
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We should look into bringing enrichment into PomBase
Options:
https://metacpan.org/release/GO-TermFinder
hierarchal filter, best per parent
https://biit.cs.ut.ee/gprofiler_archive2/r1760_e93_e…
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Hi! I am trying to run COJO to calculate conditional p-value, and found the toy example with the following command line:
`# Select multiple associated SNPs through a stepwise selection procedure
gct…
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- [ ] Support the new means/covs framework for `top;MZ;DZ` style models.
- [ ] Support ordinal DVs
A formula interface for specifying the means residualisation would be nice. It would support resi…
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Hi Everyone!
My name is Nick Tierney, I'm a research fellow at Monash University, working under Di Cook and Rob Hyndman. My research focusses on developing R packages that facilitate principled exp…