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Here's an overview of the work I'd like to do with @jdstamp to get this section together. I started writing it up as an email but figured I'd post it here for visibility.
- High-level goal: enumera…
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We've got two nice use cases of population and statistical genetics; a third use case that could attract users and contributors could be polygenic risk score computations.
I'm only glancingly famil…
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Various genetic statistical measures exist, as a first pass, try implementing the F_Statistic set. Scott sent me on a library, egglib, which includes a [module for such calculations](http://egglib.sou…
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I am currently going through the MiXeR tutorial, which I plan to implement in my current study.
When I ran the python mixer.py ld and python mixer.py snp codes to generate.ld and.snp files, I kept …
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Hi there, thanks for this great tool!
About the demonstration of gwaslab, I have one little question about gwas analysis.
Certain gwas results may represent sproadic signals across whole genome, l…
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### Title
Classification of Mild Cognitive Impairment(MCI) with machine learning models
### Leaders
Wei Shao
### Collaborators
To be determined
### Brainhack Global 2021 Event
Br…
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| Name | Department/Program | Experties/Interests |GitHub ID |
| ------------- | ------------- | ------------- | ------------- |
| Annie Cavalla | Bioinformatics | Cancer genomics, single cell tra…
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We already have partial-SVD for computing only k-first eigenvals and randomized SVD thanks to @merajhashemi for fast approximation. Would be good to add incremental SVD when we want better approximat…
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Hi all, thanks for the phenomenal library. We're already using it in several statistical genetics methods in my group!
I've been porting over some older code of mine to use optimistix, rather than …
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I apologize if this is a dumb question but I wanted to understand whether the scale parameter can parameter can be interpreted as a decomposition of variance components. I modified your multi-gpu mod…