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Hello, I think sctour is a very good tool, but if I have a known differentiation starting point cell subpopulation, can I manually specify it?
Best regards.
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Add subpopulations to the pif object.
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Hello,
I am trying to specify different scoring parameter for two subgroup. I have attached herewith a small proportion of my plan with attributes.
I'm testing cellrouter with our own data (Two conditions at day 3). There are ~20 cell sub-populations identified. K = 12 which was defined by findK functio…
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Hi
I have a list of SNPs from 3 subpopulations pairwise association tests (1vs2 ,2vs3, 1vs3) that i need to check for population stratification.I have PC1-10 values for all the 3 subpopulations taken…
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The following RMD file contains the code to produce the PDFs containing the images of subpopulations which are enriched or de-enriched in a treatment.
https://github.com/carpenterlab/2017_rohban_el…
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I have downloaded this in its latest version, using it as context:
```python
from eckity.algorithms.simple_evolution import SimpleEvolution
from eckity.subpopulation import Subpopulation
from ex…
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Not sure what ofer ment by it... Ofer, help me rephrase the problem
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Hi,
I am trying to run ngsStats to get Ho and He for two maize subpopulations.
I keep running into 236622 Floating point exception(core dumped) issues.
I have been following this example: http…
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See algorithm 2 of verticox paper. It's the same algorithm as the one that is used for the baseline hazard score, maybe we need to include it there and rename the function