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There's a well documented approach in [Wells & Prša (2021)](https://ui.adsabs.harvard.edu/abs/2021ApJS..253...32W) which I have in Zotero under ML-EB/EB/Population Analysis
This in turn makes use o…
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Update figures / text documentation of synthetic population model.
- [ ] @jamesmbaazam write up
- [ ] @JemLukeBingham update diagram
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Using the new posydon_v2_dev_env in quest by sourcing /projects/b1119/.bash_shared_v2_dev , I got this matplotlib error:
```
File "/projects/b1119/POSYDON_SHARED_v2_dev/posydon/popsyn/synthetic_…
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The [Synthetic Populations wiki page](https://github.com/PublicHealthDynamicsLab/FRED/wiki/Synthetic-Populations) says the synthetic population data can be [downloaded from MIDAS](http://www.epimodels…
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Background:
Q from JAcky:
Are all genetic interactions between 2 genes in the Genetic Interaction section of a gene page or just high through put data. Tiffany asked me if she could find out if a …
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Discussion on how to create so called synthetic population that will be used in rest of the calculations.
Synthetic refers here to micro (individual) level data where we have individuals with:
- B…
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# Parameter files organization
In order to illustrate the use of parameter files, we should have a snippet/default version of each one. Hence users will be able to produce they own based on the one…
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https://github.com/winstonll/SynC/blob/cf224355894254466f3a6bbcacce6ed761e98a95/models/synthetic_population.R#L13
any ideas why this throws an error?
I get (traceback):
===
Error in `[.tbl_d…
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While it is useful to be able to write out the synthetic population for selected years, the default should be that the synthetic population is not written out. Currently, it is hard-coded that the fin…
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We can probably make some conversions for the interaction types.
1. For any legacy GI "synthetic lethal", convert to new style, as long as there are phenotypes for
term FYPO:0002061 inviable v…