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https://www.nature.com/articles/s41467-019-08844-4
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I conducted some tests using a small nematode gut metagenome assembly as the input (Note- I have uploaded here the fasta file in .txt format to comply with the upload format requirements).
[nematode_…
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Hi,
Thank you very much for creating a good tool Ganon, I am using Ganon for taxonomic profiling but my target is not only bacteria and viruses, but also to identify species belonging to algae, fungi…
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- CLARK-S uses a spaced discriminative database for classification
- taxonomic profiling using CLARK-S with Bacteria + Viruses database on genus/phylum/domain/species levels
- taxonomic profiling u…
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Thanks for the good software.
I have completed the searching and profiling commands and got profiling results of multiple samples. How to merge these profiling results into one feature table for d…
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### Description of feature
https://www.biorxiv.org/content/10.1101/2022.01.31.478527v1
FYI the preprint that @Midnighter linked used PacBio's snakemake workflow for HiFi/nanopore reads with MEGA…
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Dear Wei Shen,
I really like your tool and your tutorials. I just have a question regarding long read metagenomic profiling. Is there a specific parameter combination you would recommend to use to ta…
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[BioBakery](https://huttenhower.sph.harvard.edu/tools/) Modules:
- Taxonomic profiling using [MetaPhlAn 3.0](https://github.com/biobakery/metaphlan)
- Functional profiling using [HUMAnN 3.0](htt…
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Hello
I am a beginner and I have a question about metagenomic analysis using HiFi PacBio long reads. In short read metagenomics I have seen in some papers who suggest doing taxonomic and functional…
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Hi,
can we use Decontam package for whole genome microbiome data? how?
my data doesn't categorize in OTUs or ASVs.