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Klepac-Ceraj-Lab
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snakemake_workflows
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Weekly meeting for 2022-07-26
#59
denizeu
closed
2 years ago
0
Weekly meeting for 2022-07-19
#58
denizeu
closed
2 years ago
3
Automatically resubmit attempts
#57
denizeu
opened
2 years ago
2
Weekly meeting for 2022-07-12
#56
denizeu
closed
2 years ago
0
threads for kneaddata & Nproc for Metaphlan via cluster
#55
denizeu
opened
2 years ago
2
Weekly meeting for 2022-07-05
#54
denizeu
closed
2 years ago
0
reduce size of test files
#53
kescobo
closed
2 years ago
0
Weekly meeting for 2022-06-30
#52
denizeu
closed
2 years ago
0
Making Checkpoint Rule For Compression
#51
denizeu
opened
2 years ago
9
Weekly meeting for 2022-06-21
#50
denizeu
closed
2 years ago
2
Compression of Kneaddata
#49
kescobo
closed
2 years ago
2
Weekly meeting for 2022-06-14
#48
denizeu
closed
2 years ago
1
Weekly meeting for 2022-06-07
#47
denizeu
closed
2 years ago
1
Convert cluster_template.yaml to a Profile
#46
kescobo
opened
2 years ago
0
Make paths absolute
#45
kescobo
closed
2 years ago
1
Add checkpoints and compression for kneaddata
#44
kescobo
opened
2 years ago
0
Testfiles
#43
kescobo
closed
2 years ago
1
Weekly meeting for 2022-05-31
#42
denizeu
closed
2 years ago
1
Weekly meeting for 2022-05-25
#41
denizeu
closed
2 years ago
1
Weekly meeting for 2022-05-02 to 2022-05-24
#40
denizeu
closed
2 years ago
2
Add nthreads argument to kneaddata rule
#39
kescobo
opened
2 years ago
4
Remove all hard-coded paths
#38
kescobo
opened
2 years ago
0
Add weekly meeting template
#37
kescobo
closed
2 years ago
0
added my name
#36
denizeu
closed
2 years ago
0
Change txt to tsv
#35
kescobo
closed
2 years ago
0
Bump pillow from 8.4.0 to 9.0.0
#34
dependabot[bot]
closed
2 years ago
0
Add some parameters to rules
#33
kescobo
closed
4 years ago
0
Advanced documentation
#32
kescobo
opened
4 years ago
0
Workflow split
#31
kescobo
closed
4 years ago
0
Biobakery3
#30
kescobo
closed
4 years ago
0
fix humann2, templates, and kneaddata
#29
kescobo
closed
5 years ago
0
Humann2 fixes
#28
kescobo
closed
5 years ago
1
Try mOTUs for taxonomic profiling
#27
kescobo
opened
5 years ago
1
Workflows don't use executable paths specified in config file.
#26
kescobo
opened
5 years ago
0
update default cluster settings
#25
kescobo
closed
5 years ago
0
Better reports
#24
kescobo
opened
5 years ago
1
Merge pull request #20 from Klepac-Ceraj-Lab/add-folders
#23
kescobo
closed
5 years ago
0
Remove well # from sample wildcard
#22
kescobo
opened
5 years ago
0
Add unit tests
#21
kescobo
opened
5 years ago
0
add output and log folders if they don't exist
#20
kescobo
closed
5 years ago
0
Template
#19
kescobo
closed
5 years ago
0
Add compression finalizer rules
#18
kescobo
closed
5 years ago
0
Setup folder structure
#17
kescobo
closed
5 years ago
0
Add graph generation
#16
ltso3
opened
5 years ago
1
Add phyloseq module
#15
ltso3
opened
5 years ago
0
Add finalizer rules
#14
kescobo
opened
5 years ago
0
Add additional logging to workflows
#13
kescobo
opened
6 years ago
0
Add ability to automatically resubmit
#12
kescobo
opened
6 years ago
0
Cluster modifications
#11
kescobo
closed
5 years ago
1
Add Kraken 2 option for tax profiling
#10
kescobo
opened
6 years ago
0
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