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# primary tasks
- [x] download TCGA MAF files
- [x] Map TCGA rows to proteins from our datasets
- DONT INCLUDE KIBA UNTIL WE GET ALL AFLOW CONFS (to ensure consistent test sets and so we don't …
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http://firebrowse.org/api-docs/#!/Samples
https://rpubs.com/lwaldron/TCGA_prad
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0106397
https://www.ncbi.nlm.nih.gov/pubmed/26704…
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Hi TCGAbiolinks!
I want to download ESCA and miRNA data, and analyze differentially expression genes according to G staging. But I have a problem with TCGAanalyze_Preprocessing. I run the followin…
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Hello, there are some parameters do not work in TCGAbiolinks::TCGAVisualize_volcano. such as xlim, ylim etc.
I find that these parameters are not used by accessing the source code
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Hello,
I recently ran into some problems with TCGAbiolinks.
I used the TCGAbiolinks package in april 2018 to download the bladder cancer set and ran some analysis. Unfortunately I don't know which v…
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What are the chances the TCGA data used in the README or the code used to collect it from TCGAbiolinks could be made available?
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I am doing the pipeline according this [toturial](https://www.bioconductor.org/packages/devel/bioc/vignettes/TCGAbiolinks/inst/doc/tcgaBiolinks.html).
```r
clin = GDCquery_clinic("TCGA-BRCA","clin…
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tcgabiolinks.fmrp.usp.br/PanCanStem/
Is this website still under maintenance?
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首先感谢曾教授及其团队的贡献
在跑tutorial时,有两个问题:
其一,在使用seurat v5和其配套的seuratobject运行find_markers_in_bulk时发生错误,后面在降级到v4就能够正常运行了,是新版IOBR不支持v5还是我电脑配置问题呢?
其二,在使用TCGAbiolinks获取突变数据时,发生Error in `dplyr::bind_rows()`:…
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Hi,
it is very useful package! I download fpkm gene expression data from TCGA by TCGAbiolinks package, and i try to get the immune subtypes of the LUAD samples by using this package.when i compare t…