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running the code Pebblecounts.py, after the selection of filters, in scale 1 of 3 a large number of windows are tested:
How can I set manually the window size (or the windows number)??
```
..…
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### Description
When attempting to access the settings of the `tophat` extension, an error is thrown related to the Gnome Shell's Clutter library. It seems that the typelib file for Clutter is not fo…
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I recently came across this library when looking for a fast GPU implementation of a white top-hat transform (`result = data - dilate(erode(data))`) with python bindings. The only thing I found was th…
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![tophat-temp-issue](https://github.com/fflewddur/tophat/assets/4774314/0a724bbb-8c30-4070-aede-5b7236b76c3e)
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## Description
Hello Christopher, we sure would like a fancy goots wearing a tophat and/or a monocle.
![image](https://github.com/christrotter/gootsmoji/assets/12434761/0ee8e5c9-0c26-48f8-9428-9…
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Hi,
Im preatty new in the field of bioinfomatics, and I having some issues runing the program. We used TopHat Aligner to create some bam files (I used the --MinMAPQ 50, because it was recomended). I…
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Hi,
In the mapping with tophat-fusion step, I get the below error:
```
$ clear_quant -1 206_1.fq.gz -2 206_2.fq.gz -g /library/hg19.fa -i /library/hg19.fa -j /library/hg19.fa -G /library/hg19.g…
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I have installed all the bowtie, tophat and samtool packages recommended for the tophatfusion run, but getting this error, it cant locate my samtools. I have version you have asked to install...Kindly…
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Hi,
I want to annotate tophat fusions.out file with gene names. So after running Tophat with --fusion-search option, I got fusions.out file. Now I want to run tophat-fusion-post. I have cretaed the r…
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The new way of adding costumes or formes is to separate them from the regular versions. In the beginning pokemon were grouped by type, e.g smootchums by smootchums. Most have been corrected over time …