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We should have a look and maybe discuss with these guys : https://github.com/soft-matter/trackpy
hadim updated
9 years ago
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Python 3.12.4
trackpy 0.6.4
The following runs without error:
`f = tp.batch(frames, 11, invert=False, minmass=500, processes=1)`
whereas processes = 2 gives a long error message ultimately en…
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https://soft-matter.github.io/trackpy/dev/tutorial.html
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Trackpy internally uses np.Inf which was removed in numpy version 2.0.0 (should use np.inf instead) leading in an error in multiple trackpy functions (such as link).
To replicate, install numpy 2.0.0…
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Have you ever noticed that trackpy imsd functions always look like they drop to zero at the longest lag time?
They shouldn't, but they do.
This zero is included in the emsd average. This appears…
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Hi all,
I'm working on a napari-trackpy plugin
So far all it does is identify and put spots layers into napari.
https://github.com/joaomamede/napari-trackpy/
In the future, I'll work with li…
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Hi Francesco,
I just came across another tracker (https://github.com/soft-matter/trackpy). I was wondering if it is possible to implement it into Cell-ACDC.
Thanks!
Ciro
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Hi Moritz,
I tried to install trackpy as below and I'm getting a conflict! Do you know how to solve it?
thanks,
Rodrigo
#######################################################################…
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### Description:
I stumbled accross an edge case when using trackpy in general.
When you have a file with PhysicalSizeX==PhysicalSizeY, trackpy will use pixel values to calculate distance. But when…
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There are many instances in observational data where the delta-time is not held fixed, or where data gaps are present. *tobac* does not currently deal with this, instead asking users to come up with a…