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Please notice the mistake in the last line of the attached code below. This is taken from the inference.py file in the ~/Chronocell/ directory. I think it needs to be changed to import_module("Chronoc…
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- [ ] ATAC
- Work in progress: https://github.com/openpipelines-bio/openpipeline/issues/398
- [ ] CCC analysis
- Robrecht lift over from Open Problems?
- [ ] DE analysis
- [ ] Gene signatures…
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Hello,
I am currently getting this error:
model
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I'm having trouble running dynwrap::infer_trajectory() on my data.
My installation seems to be okay, the methods work fine on the toy data.
However, on my data (and verbose=TRUE), I get a lot of p…
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Hi,
I was just discussing the AnnData to R conversion that @flying-sheep is developing, and we noticed that there is no support for trajectory fits in AnnData. For conversions between R and python,…
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I'm having trouble running dynwrap::infer_trajectory() on my data.
My installation seems to be okay, the methods work fine on the toy data.
However, on my data (and verbose=TRUE), I get a lot of p…
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Link: [Arxiv](https://arxiv.org/pdf/1907.04202.pdf)
Problem:
> Probabilistic ensembles with trajectory sampling (PETS) is a leading type of MBRL, which employs Bayesian inference to …
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Hi! I was following the tutorial for running an evaluation of TI methods: https://dynverse.org/developers/evaluating-ti-method/. I wanted to run this with monocle3, but it is giving me a could not fin…
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I've been trying to run Dyno so as to proceed to lineage inference from a public dataset.
I've done the preprocessing to reshape de data to the required input format (counts and expression matrices…
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Copied from the [RFA](https://chanzuckerberg.com/initiatives/rfa)
The goals of this RFA include, but are not limited to:
* Developing standard formats and analysis pipelines for genomic, proteom…