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The transcription factor (TF) gene symbols in the recommended list to be used with pySCENIC (https://resources.aertslab.org/cistarget/tf_lists/allTFs_hg38.txt) include some genes that are assessed to …
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When I try to search for all DNA-binding transcription factors
this annotation is the first in the list
URS00001B341F_9606 | Homo sapiens (human) hsa-miR-27a-5p | | negative regulation of NF-k…
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I've been experimenting with the distil whisper models as an alternative to the standard whisper models. While I was able to successfully integrate the distil models, I'm experiencing some issues with…
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Hello,
According to our rules not to capture specific gene products, I think those terms should be obsoleted:
Number EXP annotations | Term
-- | --
10 | vitamin D receptor binding
39 | thyr…
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### [Transcription factors](https://www.youtube.com/watch?v=Sd3imcsvXxI)
1. Transcription factor (proteins) control the expression of genes by regulating the process of gene transcription.
![gene-…
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# Task Name
Brazilian Portuguese Speech Recognition
## Task Objective
This task aims to perform automatic speech recognition on a set of audios in Portuguese (PT-BR). Portuguese is the sixth …
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In reviewing a number of our C. elegans transcription factor annotations, I see that they are getting annotations to both:
'transcription, DNA-templated' GO:0006351 via KW-0804
and
'regulatio…
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Hi, I am using RcisTarget for the GRN construction using SCENIC.
I wanted to investigate the Rcistarget database in order to know which genes are transcription factors and which genes are target ge…
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General classification for ligand activated transcription factors:
https://en.wikipedia.org/wiki/Nuclear_receptor
Dependency: Needs pattern for (DNA binding) transcription factor activity first
…
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I recently ran the pipeline with a transcription factor as the input protein (Q96QS3). Looking at the results, there are not really any high quality hits. Most have TMscores