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When running the latest tDRnamer in Docker, I got the following error:
```
Traceback (most recent call last):
File "/opt/tdrnamer/clustertdrs.py", line 224, in
fragstk = list(readrnastk(o…
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Please remove 'sncRNA' (SO:0002247) and 'sncRNA_gene' (SO:0002342) grouping classes.
These 'small non-coding RNA' terms are defined simply based on length ("a ncRNA less than 200 nucleotides") - es…
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**What is the SO term name and accession?**
SO:0001877 lncRNA
non-coding RNA generally longer than 200 nucleotides that cannot be classified as any other ncRNA subtype.
**Describe what you …
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Please provide as much information as you can:
* **GO term ID and Label**
GO:0065009 "regulation of molecular function"
* **Reason for deprecation**
We have discussed that this term an…
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see GO ticket go-ontology/issues/23135
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Beginning with sequence-based searches of the literature via PaperBLAST and using the sequences acquired from PomBase, UniProtKB
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Hey all,
I am interested in knowing the isodecoder copy number from which certain fragments are derived. For example, in the count output I know:
"tRNA-Ala-AGC-1-1_wholeprecounts"
"tRNA-Ala-AGC…
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Hi Danny,
I have been comparing the Ding 2014 and Siegfried 2014 scoring methods on processing RT Stop Count data of RNAs for my research and as I was digging through the results I noticed some inc…
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Creating this thread to post potentially useful info about _Pichia pastoris_/_Komagataella phaffii_ that people come across.
Quick background: _Pichia pastoris_ (now named _Komagataella phaffii_) i…