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dincarnato
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RNAFramework
RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
http://www.rnaframework.com
GNU General Public License v3.0
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~/Software/RNAFramework/rf-fold -m 1 -g -md 50 -w -pk -ko 10 -pw 160 -po 37 -wt 30 -fw 300 -fo 30 rf-norm/FSE.xml -o rf-fold2 -ow
#67
wangguiqian
closed
1 day ago
12
Issu in rf-eval
#66
Asperatus22
closed
2 weeks ago
2
rf-fold - 1 folding failed
#65
laure-g
closed
1 month ago
10
rf-fold error: Environment variable DATAPATH is not set
#64
laure-g
closed
1 month ago
2
Issue with RNAFramework installation
#63
Frappadoo
closed
1 month ago
18
Differences in coverage between RT stop and MaP mode for rf-count?
#62
SichongP
closed
2 months ago
15
BAM ignored
#61
physnano
closed
2 months ago
1
rf-rctools stats
#60
light0112
closed
4 months ago
5
rc file to mm file
#59
Asperatus22
opened
4 months ago
2
parsecigar line #1158 in rf-count
#58
reamesb
closed
2 months ago
4
fix: migrate docker conda env to python 3.10
#57
kenibrewer
closed
5 months ago
1
[Bug] Dockerfile build failing
#56
kenibrewer
closed
5 months ago
1
rf-count "File contains unsupported line endings ("\r")"
#55
jsromanowski
closed
2 months ago
1
Permission denied for group
#54
Asperatus22
closed
6 months ago
1
rf-correlate
#53
Shuang1248
closed
7 months ago
2
rf-map&rf-count
#52
Shuang1248
closed
7 months ago
12
rf-combine : file name use instead of transcript id
#51
Asperatus22
closed
7 months ago
5
rf-wiggle outputs ratios greater than 1.
#50
mohamedbahru
closed
7 months ago
13
rf-count-genome outputs 0 % mutated alignments
#49
mohamedbahru
closed
8 months ago
3
Multithreading cut adapt?
#48
herber4
closed
8 months ago
1
Shannon entropy
#47
Asperatus22
closed
9 months ago
4
Question about RNAFramework rf-rctools view
#46
MeganSylvia
closed
10 months ago
5
rf-fold is not working with my xml reactivity file?
#45
adiroy92
closed
10 months ago
3
Mutation counts from secondary alignments?
#44
physnano
closed
9 months ago
5
rf_count frequencies folder
#43
dfporter
closed
11 months ago
2
rf-count-genome: mutations by class
#42
physnano
closed
11 months ago
2
Empty extracted .rc file
#41
physnano
closed
12 months ago
9
--only-mut issues
#40
catherine-douds
closed
12 months ago
3
shapemapper2 comparison
#39
catherine-douds
closed
1 year ago
14
Rf -fold does not work with RNA structure
#38
Frappadoo
closed
1 year ago
8
Hi Danny,
#37
Frappadoo
closed
1 year ago
0
rf-map statistics showing poor mapping_ion torrent read compatibility
#36
adiroy92
closed
8 months ago
3
no output with rf_compare
#35
Asperatus22
closed
1 year ago
2
minimap2 BAM compatibility? - Undefined value as an ARRAY reference : Line 614
#34
physnano
closed
1 year ago
5
-smp use in rf-fold
#33
Asperatus22
closed
1 year ago
4
Feature/docker builds
#32
kenibrewer
closed
1 year ago
3
Performing the Siegfried scoring method on RT stop data
#31
MeganSylvia
closed
8 months ago
6
[Suggestion] Add a public Docker image or Dockerfile
#30
kenibrewer
closed
1 year ago
5
Experiencing trouble with rf-rctools merge
#29
Asperatus22
closed
1 year ago
4
RNAFramework inside of conda environments?
#28
Kobie-Kirven
closed
1 year ago
3
Could we use STAR for mapping?
#27
dinktnwo
closed
1 year ago
4
rf-duplex change /usr/bin/perl
#26
james-vincent
closed
1 year ago
2
Splicing bug when running rf-json2rc module
#25
anaveira4
closed
1 year ago
5
1 folding failed
#24
liangyi521
closed
1 year ago
8
Question about rf-count-genome
#23
ToshiDK
closed
2 years ago
0
rf-json2rc --extend parameter omits terminal nucleotide of reference sequence
#22
nickforino
closed
2 years ago
1
java.lang.module.FindException: Module javafx.controls not found
#21
amir-tagh
closed
2 years ago
2
Oddities with reference coverage
#20
A-N-Other
closed
2 years ago
8
Mutation rate stats and per base coverage
#19
aichilizi
closed
2 years ago
6
rf-count multiprocessing
#18
coffeebond
closed
2 years ago
16
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