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#### Which new datasets are being added with this release?
#### What is the sample breakdown (number of WGS, WXS, RNA-Seq, Panel, Methylation, other)?
https://d3b.atlassian.net/browse/BIXU-3767
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Hi infercnv team,
I am running infercnv with the following command:
```
infercnv_obj = infercnv::run(infercnv_obj,
cutoff=0.1, # cutoff=1 works well for Smart-seq2, …
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# Description
In the next release of balsamic, v16.0.0, the version of multiqc has changed to ensure that some metrics are correctly picked up. As a side-effect major changes to the outputted json …
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### Operating System
Other Linux (please specify below)
### Other Linux
Red Hat Enterprise Linux release 8.6
### Workflow Version
v.1.2.1
### Workflow Execution
Command line (Cluster)
### Othe…
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![image](https://github.com/user-attachments/assets/fb2bf55f-559b-4d1a-9e93-0170df25e0e6)
MSI und TMB aus MolGen vererben und interpretation wieter auspezifizieren
BRCAness und HRD neu anlegen…
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Compare transcriptomes of B-ALL cells from our RNA-seq to the transcriptomes from the paper:
`Single-cell functional genomics reveals determinants of sensitivity and resistance to natural killer cells…
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**Description**
- Prod request: Add Sex QC check
**Suggested solution**
- Parse Somalier output to in particular `Y_depth_mean` and `X_depth_mean` to infer sex of samples and add a fail if T…
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## Need
### TMB calculation today in BALSAMIC
The current definition is based on:
1. TMB was defined as the number of somatic, coding, base substitution, and indel mutations per megabase of genome …
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When I try to run example code, I get the following error:
infercnv_obj_default = infercnv::run(
infercnv_obj,
cutoff=1, # cutoff=1 works well for Smart-s…
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### Need
MSI analysis was requested to be included to the workflow in https://github.com/Clinical-Genomics/BALSAMIC/issues/972
### Suggested approach
Add [MSIsensor-pro](https://github.com/x…