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fiftyone 0.25.2
fiftyone-brain 0.17.0
umap-learn 0.5.6
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**Description**
- It adds a caption that is incorrect for anything but the standard umaps
- Therefore I disabled it now.
**Problems**
1. `.parseKeyParams()` calls `.getNrPCs(obj)`, and it has no…
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@ziw-liu , I have been using 2 UMAP components for plotting and 4 components when I compute correlation with computed features. Does this mean it will change the interpretation of result…
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I'm getting the following error for `run_umap`
![image](https://github.com/user-attachments/assets/4a550d5e-6477-49fe-976d-82196512e7be)
where Cell is the column name containing cell ID values.
…
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Hello,
I've been trying to implement UMAP in the context of CellViT, but my results have been quite messy. It seems that the cells from different classes are mixed together rather than showing clea…
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when `label="motif"` or `label="community"`, the `vame.visualization` function generates the umap figures with datapoints colored according to their cluster, but these figures have no legend to indica…
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Implement a transform method, we can get inspiration from what UMAP does :
https://github.com/lmcinnes/umap/blob/master/umap/umap_.py#L2906-L3136
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Hi, @rcorces @jeffmgranja @jgranja24 @keyuxi
I would llke to copy my entire ARCHR project cluster, embedding, umap ... into a seurat object but I do not succed to copy embeddings
I try many thi…
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Hello,
1) I'd like to have a little more clarity on the QCs and parameters used to generate the cellbin UMAP on the SAW report.
I know stereopy is used, but I would like to know the values of th…