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Currently, this repo has UPPMAX as the owner, hence the `UPPMAX` in `https://github.com/UPPMAX/programming_formalisms`. With that owner, the content for the DOI of this repo needs to updated manually …
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Might break some stuff.
@jfy133 anythoughts on moving to a structure similar to the modules repo?
```console
$ tree conf/utd_ganymede/
conf/utd_ganymede/
├── utd_ganymede.config
└── utd_ganymede.md…
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Probably because it is redirected or that the` docs.uppmax` server hinders lychee to knock on the door
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@bclaremar
tried the following after some googling
- --max-redirects 10
- --user-agen…
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We do have all our confidences collected. This may help us improve our sessions.
Graphs can be found at https://github.com/UPPMAX/programming_formalisms/tree/main/evaluations/2024_autumn :+1:
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Graphical content
- thinlinc
- special instructions in tab for Dardel
- (show filezilla?)
- written instruction for Cyberduck and WinSCP
terminal content
- OS tools to connect
- speci…
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Please inform here what is needed and, if possible, the different demands for different systems.
@bclaremar will gather the packages for the users to install as virtual environments on their cluster
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The notes state:
- Connecting through:
- linux/mac terminals with ssh
- Windows tools with ssh
- putty
- mobaxterm
- Thinlink
- VS-code (maybe too advanced)
How do we…
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On November 26th, 3 days ago, a new release of this course came out: https://github.com/UPPMAX/programming_formalisms/releases/tag/v0.8.1
There are, however, quite some folders we do not use. I sug…
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In the `feature_hic_scaffolding` branch many processes are requesting >20 cpus when using the Uppmax profile. This causes an error and nextflow exits the pipeline.
This happened with FASTK_FASTK (r…
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https://uppmax.github.io/HPC-python/day2/parallel.html#dask
May I take this part?
You may however mention the task scheduler possibilities.
https://docs.dask.org/en/stable/scheduling.html
Wh…