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Implements new ansatzs and new methods to compute
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As someone involved in the recent tsdate releases, I'm wondering how tsinfer+tsdate_v0.2.1 performs (e.g. compared to Relate). The recommended way to perform ARG inference now is
```python
import …
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Once we have a reasonable variational method working, we should add a test or two to `test_accuracy.py` so that we pick up any regressions. Do you think you could do this @nspope ?
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We probably want to allow advanced users to date using variational_gamma with tree seqs with unary nodes, but we want to fail or warn the casual user that this could be bad. What should the API for th…
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This issue can be a collection and discussion of methods we could add to the library at some point, in no particular order :) Feel free to comment with suggestions and if you feel comfortable, you are…
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Hi Stefano,
Flagging some interesting behaviour I've come across with the package.
Problem: The 1d credible intervals plot is showing different results in terms of rank, credible interval and FDR …
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It might be useful to add a dedicated `approximate(Ψ₀::AbstractMPS, Ψ::AbstractMPS, algorithm, [environments]; kwargs...)` method for a globally optimal truncation of a given MPS. It is mentioned in t…
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One of the tests for the inside_outside method is `test_sample_as_parent_fails`. Can we actually date samples that have descendant undated nodes using the current `variational_gamma` implementation, o…
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**Is your feature request related to a problem? Please describe.**
This isn't a big deal, but now that we have multiple sampling algorithms, it would be nice if we could condense the syntax for speci…
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The API description has the following two methods for `vi`:
- `vi(model, alg)`
- `vi(model, alg, q::VariationalPosterior, θ)`
The first method is needed when the algorithm only supports one varia…