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vf db represents every gene associated with any pathogen and most don’t have anything to do with pathogens…
RNAer updated
8 years ago
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https://www.ncbi.nlm.nih.gov/pubmed/30365026?dopt=Abstract
Victors: a web-based knowledge base of virulence factors in human and animal pathogens.
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https://github.com/brinkmanlab/islandviewer_dev/blob/62dbaaa3baea56f3224c594c9dce9bb0013c6dba/lib/Islandviewer/Islandpick.pm#L322
Migrate to IslandCompare, purple flags above sequences.
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Hello Prokka team,
I have been using Prokka with a default setting for annotating E. coli genomes. I noticed that the identified virulence factor genes are different between ABRicate (VFDB) and Prok…
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thank you for your work, i want to replicate the model presented in this paper and apply it to my own research.
but i can not found the preprocess of inputdata, and where the 'datad_train', 'datad_va…
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https://canto.phi-base.org/curs/14a019de155e0d8d
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Hello! Thank you for your time and support, I am currently trying to run PathoFact to check for virulence factors in one of my samples but I keep getting the same error message saying I am missing inp…
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Hello,
I try to use blast-to-csv.py but it seems that it does not work. I received this error message :
File "blastparser.py", line 333
print '...', n
^
SyntaxError: Missin…
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Term PATHGO:0000023 'disruption of action potential propagation' has a comment that states "inconsistent as a subclass as this is a consequence of ion channel activity modulation; should be moved". T…
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We need to be able to model pathogenicity.
The first decision we need to make is whether to use the PATO (PATO:pathogenicity and inheres in some 'whole organism') vs the GO pattern ('increased rate…