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It would be interesting to see if we can implement HMMs where the emission also depends on the previous emission
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Author Name: **P. Horton** (P. Horton)
Original Redmine Issue: 2976, https://redmine.open-bio.org/issues/2976
Original Date: 2009-12-26
Original Assignee: Bioperl Guts
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Working with Bioperl-…
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The naive diploid Viterbi algorithm doesn't scale well with the number of reference haplotypes, slowing testing (#65). @astheeggeggs suggested an alternative implementation that "merges" partial ances…
szhan updated
4 months ago
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## I am reporting a bug ( I think?)
Hello, I had a question about changes to the _hmmlearn_ package in the latest release and how that might affect fitting the Viterbi sequence. We've been using v…
rg727 updated
2 months ago
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当需要分词的是一个文本段落时，viterbi函数中的max函数报错
Traceback (most recent call last):
File "D:\code\python_test\test\start.py", line 11, in
print(str(list(res)))
File "D:\code\python_test\test\hmm.py", …
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## Expected Behavior
MAC realignment algorithm is enabled by default in hhsearch/hhblits/hhalign and
it's expected to improve the quality of hits' alignments.
## Current Behavior
In some c…
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https://bex.meishakeji.com/2019/10/22/hmm-viterbi-cut/
前言在处理题库去重采用了关键词提取+simhash的办法。而提取关键词之前，需要先进行中文分词。一种基本方法是基于词库进行分词，但显然词库是不可能齐全的，这时，为了确认对于未被记入词库的词（未登录词）如别被处理，就需要有一定了解，才能准确应对意外的分词情况。本文为作者在进行题库去重过…
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This will give a boost to the project, there are a few scalable and open solutions to this problem.
In my short discussions @harsha2010, a HMM-based approach was mentioned.
@harsha2010: what is th…
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Right now I don't know much of what's going on when I use `run_HMM`.
I think we should have text output and progress bars for each long section, e.g.:
```
# Loading input files
**************…
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Hi,
**Use case**
I am using ATAC-seq data from plants materiels with 3 replicates. The data set was build on more or less 60K of cell in differents tissues.
**Describe the problem**
First I la…