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:cool:
### :pushpin: Explain the Request
This is relevant to the Mercury_prep_N_Batch workflow, specifically workflow v2.2.0 and higher which uses Mercury v1.0.8
I have seen instances where t…
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### Feature Request
It is troublesome and error prone to manually update the workflow version.
### Solution
Use a GitHub Action to automatically update the version (including the git tag) whe…
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### Feature Request
We are reaching our CPU limit for our production Terra workspace. This is negatively impacting our pipeline and preventing us from reliably meeting dashboard updates.
This is…
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The TSV spit out by the decontam task is different based on the decontamination reference genome that gets used. Currently, when the CRyPTIC reference is used, the wrong thing happens.
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### Feature Request
This issue is a solicitation for feedback on an idea.
I've been working on the [RSV pipeline](https://github.com/CDPHE-bioinformatics/CDPHE-RSV) and reusing tasks from this r…
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I'm running a workflow like this:
```
MINIWDL__CALL_CACHE__GET=true MINIWDL__CALL_CACHE__PUT=true MINIWDL__CALL_CACHE__DIR=`pwd`/output/miniwdl-cache MINIWDL__SCHEDULER__TASK_CONCURRENCY=80 time min…
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I think as of #4994, and somewhere in the diff between b3a016c3fd03ee23712145c4b381d34db1f0d407 and fb3b6304932f82df272bb0fc315235bf9e836eac, we added a regression and #4850 came back and WDL tasks ca…
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:bug:
Hello, I ran the theiaproke workflow on my local computer (macOS, M3) using miniwdl. I faced with the aborting workflow when running task: shovill_pe.
the run command is `miniwdl run $HOME/t…
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Hi!
When running ExomeGermlineSingleSample_v3.1.19 on local machine I get an error:
Job VariantCalling.HaplotypeCallerGATK4:2:1 exited with return code 247 which has not been declared as a valid re…
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This milestone is due FY24 Q4
aclum updated
2 months ago