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hello
Thank you for providing the excellent pan-mammalian clock tool. I would like to use it to predict the age of my samples based on WGBS data. However, it seems that your tool is designed to be co…
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I'm trying to get a handle on the experimental design and metadata for the Ceasmallr samples. I've read through the methods in [Yaamini's paper](https://doi.org/10.1093/eep/dvae018) (the ceabigr data)…
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안녕하세요!
package install 하여 MethylCallR_data_processing_with_public_EPICv2_data.Rmd 파일을 사용하여 여러 기능들을 살펴보고 있습니다.
현재 data import는 되는데, Chunk2의 data.filtered
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Hi, I have some WGBS data and would like to check the copy number variant in these data. However, I am not sure whether CNVkit is suitable for WGBS data since the methylated C is converted to T in WGB…
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I found that the repeat regions were not well aligned using the default parameters when I aligned the WGBS data to the hg38 genome. I am wondering if there are any recommended parameter settings for a…
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Hi,
I am coming from [here](https://github.com/huishenlab/sv_calling_docker).
Basically, Delly is one of the tools suggested to identify SVs from WGBS data.
I am wondering to what extent this…
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Hello,
sorry to bother again. I've been trying to look for the WGBS DNA methylation data, but it does not seem to be available in GEO. Is it available somewhere?
Thank you!
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Input requirements:
1. Count matrix of mRNA expression with samples in rows and genes in columns
2. Count matrix of smallRNA expression with samples in rows and genes in columns
3. Count matrix…
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Thanks for developing this tool for ceDNA analysis. I have some bam files from generated from WGBS data and am wondering if AmpliconSuite is able to use these bam files as input for ceDNA detecion? If…
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Hi, Felix.
I'm so sorry to bother you again. I have WGBS data from the same batch for two species (Accel Swift data) and have already trimmed it using the method you suggested, with the following c…