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Hi!
I wonder if GenoPred can be used on illumina WGS data.
Are there any special processing I need to do for the PRS calculation? What would be the preferred config to run this?
Thanks!
Siq…
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### Detail
Coordinate WG leads about submission to DARE UK phase2 community call
### Actions
- [ ] Write email to WG leads asking about their plans
### Who can help
@manics
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#### Which new datasets are being added with this release?
#### What is the sample breakdown (number of WGS, WXS, RNA-Seq, Panel, Methylation, other)?
https://d3b.atlassian.net/browse/BIXU-3767
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It is possible to have two `CRS` objects for which `crs1 == crs2` is True, but whose string representations, and therefore hashes, are not equal. I would expect object equality and hash equality to be…
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For WGS run with full dataset.
```
singularity exec --bind /fs1 /fs1/resources/containers/verifybamid2_2.0.1.sif \
verifybamid2 \
--SVDPrefix /fs1/resources/ref/hg38/VerifyBamID/resource…
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Lims Issue
---------------
For definitions of headings below see [Basic Concepts](https://atlas.scilifelab.se/infrastructure/lims/basic_concepts/).
**Work Flow:** WGS PCR free v6
**Protocol:** Initi…
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Hi,
I am currently learning to use MitoHPC to analyze WGS data. After successfully setting up the environment and testing it according to the tutorial, the script did not perform the analysis or prod…
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Hi,
I was wondering if you had any recommendations for running nextNEOpi on WGS data where one fq.gz file is over 100GB. nextNEOpi has issues with BWA, MarkDuplicates and ReadBackedPhasing. BWA can t…
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Hello,
I was attempting to use the WGS-whole-region-deleted branch of of CRISPResso2 because I have some cas12-edit nanopore amplicon reads which are 1000bp in length and have frequent 150bp deleti…
mbosm updated
1 month ago
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OGC-API Common and OGC-API EDR both are tolerant of various ways of specifying coordinate systems, leading to variations in the implementations, like:
- `crs: WGS84`
- `crs: CRS84`
- `crs: EPSG:4…