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AFM-SPM
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TopoStats
An AFM image analysis program to batch process data and obtain statistics from images
https://afm-spm.github.io/TopoStats/
GNU Lesser General Public License v3.0
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Document HDF5 image format
#814
ns-rse
opened
3 months ago
0
Extract metadata from images and make available for saving
#813
ns-rse
opened
3 months ago
0
Extract metadata and make it available for writing to HDF5 and `.tiff` files.
#812
ns-rse
closed
3 months ago
1
Switch to using pillow for writing TIFF files
#811
ns-rse
opened
3 months ago
0
Tidies up Images.plot_and_save()
#810
ns-rse
closed
3 months ago
3
Sets the type of all arguments that are files/paths to Path
#809
ns-rse
closed
3 months ago
1
Fixing DPI settings
#808
ns-rse
closed
3 months ago
1
DPI settings from config override the plotting dictionary
#807
ns-rse
closed
3 months ago
0
Add @pytest.mark.mpl_image_compare() fixture to test_plottingfuncs.py::test_plot_and_save_no_axes_no_colorbar
#806
ns-rse
closed
3 months ago
0
[feature] : Remove smallest_grain_size_nm2 as a parameter from config (superfluous)
#805
SylviaWhittle
opened
4 months ago
1
Remove saving of gaussian filtered arrays to .npy files
#804
ns-rse
closed
4 months ago
2
Move creation of tracing dictionary saved to HDF5 from processing to dnatracing
#803
ns-rse
opened
4 months ago
2
Stop generating at .npy when running Topostats
#802
derollins
closed
4 months ago
0
Added 'pm' and 'mm' for very small and large scans
#801
ns-rse
closed
4 months ago
1
[feature] : Better Tracing & Skeletonisation Merger
#800
MaxGamill-Sheffield
opened
4 months ago
8
Add tests for very small and large scans
#799
ns-rse
opened
4 months ago
0
Look at replacing feret and centroid calculations in GrainStats
#798
ns-rse
closed
2 months ago
2
[feature] : Metadata in Outputs
#797
MaxGamill-Sheffield
opened
4 months ago
4
Added 'pm' and 'mm' for very small and large scans
#796
MaxGamill-Sheffield
closed
4 months ago
5
[Bug]: phantom traces
#795
LHolmes2
opened
4 months ago
4
[Bug]: Flattening anomoly
#794
tcatley
opened
4 months ago
7
docs : how to use snoop to debug
#793
ns-rse
closed
4 months ago
1
Consider removing io/{load,save}_pkl
#792
ns-rse
opened
4 months ago
1
[pre-commit.ci] pre-commit-autoupdate
#791
pre-commit-ci[bot]
closed
4 months ago
1
Save grain trace data to HDF5 format
#790
SylviaWhittle
closed
4 months ago
1
pytest<8.0.0
#788
ns-rse
closed
5 months ago
0
Pytest >= 8.0.0 breaks tests
#787
ns-rse
closed
4 months ago
0
[Bug]: TopoStats error on yaml dump due to depreciation
#785
MaxGamill-Sheffield
closed
5 months ago
2
[feature] : Analysis-specific "default" configuration files
#784
llwiggins
opened
5 months ago
0
Add scale and factor_to_nm to documentation
#783
ns-rse
opened
5 months ago
0
Removes py as a test dependency
#782
ns-rse
closed
5 months ago
1
Add environment to pypi.yaml publishing workflow
#781
ns-rse
closed
5 months ago
1
Unpeg pytest-regtest
#780
ns-rse
closed
5 months ago
1
fixed load_gwy to read channels correctly and fixed flipped XY ndarray
#779
iobataya
closed
5 months ago
6
Add the option to save as a `tif` file
#778
derollins
closed
4 months ago
5
Restore cmap to config; simplify config of cmap/dpi/image format
#777
ns-rse
closed
5 months ago
8
Move some params back to config file
#776
MaxGamill-Sheffield
closed
5 months ago
4
Check for Numpy2 deprecations
#775
ns-rse
closed
5 months ago
1
Preparation for Numpy2
#774
ns-rse
closed
5 months ago
0
Adds entry point to create matplotlibrc parameters file
#773
ns-rse
closed
5 months ago
3
Adds some useful pre-commit/pre-commit-hooks
#772
ns-rse
closed
6 months ago
1
[pre-commit.ci] pre-commit-autoupdate
#770
pre-commit-ci[bot]
closed
5 months ago
1
Minor tweak to pyproject.toml config
#769
ns-rse
closed
6 months ago
1
Adds numpydoc-validation to pre-commit
#768
ns-rse
closed
6 months ago
1
Adds pre-commit hooks recommended by Scientific Python
#767
ns-rse
closed
6 months ago
1
PC180: Uses prettier
#766
ns-rse
closed
6 months ago
0
PC111: Uses blacken-docs [skipped]
#765
ns-rse
closed
6 months ago
0
Auto-cancel repeated PRs
#764
ns-rse
closed
6 months ago
1
GH102: Auto-cancel on repeated PRs
#763
ns-rse
closed
6 months ago
0
[pre-commit.ci] pre-commit-autoupdate
#762
pre-commit-ci[bot]
closed
6 months ago
1
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