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AIM-Harvard
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pyradiomics
Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics
http://pyradiomics.readthedocs.io/
BSD 3-Clause "New" or "Revised" License
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fix typos
#740
lyhyl
closed
2 years ago
1
[Documentation / Question] definition of p_x(i) and p_y(j) in GLCM
#739
lyhyl
closed
2 years ago
1
How can I get GLCM matrix instesd of GLCM features?
#738
zzd963
closed
2 years ago
3
[BUG] Segmentation fault (core dumped) in voxel-wise feature extraction
#737
mligerhe
opened
2 years ago
6
[FEAT EXTRACTION]question on Using Filtering
#736
yangwei1993
closed
2 years ago
1
How can I get GLCM features in multiple directions instead of an average?
#735
wyh9805
opened
2 years ago
1
DOCS: Update notebooks directory in usage docs
#734
anthonyjatoba
closed
2 years ago
0
[FEAT EXTRACTION]
#733
x186
opened
2 years ago
4
[FEAT EXTRACTION] Remove discretization
#732
rgutsche
closed
2 years ago
1
[BUG] 3D Slicer Error
#731
codeenthusiast
opened
2 years ago
0
[DOCS] Bounding Box coordinates
#730
ivanzhovannik
closed
2 years ago
1
I am trying to run getFeatureNames but I am getting error?
#729
abhinandanbatra
closed
2 years ago
1
[FEAT EXTRACTION] Voxel-based extraction work using python API
#728
mattwarkentin
closed
2 years ago
1
Feature extraction for bin-width 255
#727
sovanlal
opened
2 years ago
1
Can I enable multiple features using enableFeatureClassByName or I can only do one at a time? If I provide more than one class with this function, it only runs the first provided class.[FEAT EXTRACTION]
#726
abhinandanbatra
closed
2 years ago
1
Voxel + Batch mode
#725
smcch
opened
2 years ago
0
Expose mask correction and geometry tolerance to the pyradiomics-dcm CLI
#724
piiq
closed
2 years ago
1
Multiple wavelets with one parameter file? [FEAT EXTRACTION]
#723
asy51
opened
2 years ago
1
RuntimeError! When i try to extract features from my datasets, there are something wrong.
#722
cvcaiji
closed
2 years ago
1
[BUG] Possible numpy version mismatch with precompiled binaries
#721
stefanhige
opened
3 years ago
0
Reading .mat file with PyRadiomics
#720
Rezwanarosen
closed
2 years ago
3
'RadiomicsFeatureExtractor' object has no attribute 'kwargs'[FEAT EXTRACTION]
#719
Rezwanarosen
closed
2 years ago
2
module 'radiomics.featureextractor' has no attribute 'RadiomicsFeaturesExtractor'
#718
Rezwanarosen
closed
2 years ago
4
[FEAT EXTRACTION] Adding new features
#717
Mojzaar
closed
2 years ago
1
[FEAT EXTRACTION] How to Extract features with Local Binary Pattern Filtered Image
#716
gm039
opened
3 years ago
1
voxel-based extraction
#715
smcch
closed
2 years ago
11
How to add Wavelet Filtering in the Python Command?
#714
Mostafa-coder2020
closed
3 years ago
3
Hello . I need to extract shape features only from T2 weighted pre contrast images (coronal)with .dcm as extension and then save the result in a csv file ? Kindly help with the code . Thank you
#713
SyedaFatima123
closed
2 years ago
1
[BUG] Enabling wavelet calculation may have empty result in 3D Slicer
#712
ykuo2
opened
3 years ago
3
[FEAT EXTRACTION] Will updating 3D Slicer Radiomics extension from 2.2 to 3.0.1 affect the calculation result?
#711
ykuo2
opened
3 years ago
1
GLRLM and GLSZM features are duplicated in 2D extraction
#710
alex-weston-13
closed
3 years ago
2
Parallel processing for voxel feature extraction
#709
zndr27
closed
3 years ago
1
[FEAT EXTRACTION] Hi everyone, after extracting features, I got the value for " GLSZM_Small Area Emphasis", " GLSZM_Small Area High Gray Level Emphasis", "GLSZM_Small Area Low Gray Level Emphasis" for 2 kinds of image: PET original and coregistered PET. However, the percentage difference of those features in 2 images are extremely high ( 3500%,282%, 293%,...) So I am wondering if there is anyone handled this problem before? Can you please help me. Thank you so much OS: Window 10 ; Python version:3.6; Pyradiomics version: 3.0.1
#708
trangphan046
closed
3 years ago
2
My data is based on MRI and feature extraction is supported only by FirstOrder and some Shape features.
#707
sugar-su
closed
2 years ago
1
ROI normalization
#706
zzhan127
closed
2 years ago
1
Filters (Log, Wavelets...) applying on the enlarged ROI
#705
chengjianhong
closed
3 years ago
1
[FEAT EXTRACTION] Today I loaded 2 files of Mask and Image to extract the feature and Pyradiomics shows me this error: "Label (1) not present in mask. Choose from [5]". I tried with the command line : "pyradiomics II_T1_19_image.nii II_T1_19_label.nii -l 5" but it doesnt work. Could you please help me? Thanks so much. OS: Window 10 ; Python version:3.6; Pyradiomics version: 3.0.1
#704
trangphan046
closed
3 years ago
0
[FEAT EXTRACTION] Hi everyone, previously, I used the segmentation from LifeX and then apply for Pyradiomics ( file mask.nii). Now, I am wondering if I can do the segmentation directly from Pyradiomics. Thanks for your consideration. OS: Window 10 ; Python version:3.6; Pyradiomics version: 3.0.1
#703
trangphan046
closed
3 years ago
3
[FEAT EXTRACTION] Image original Spacing and Mask-original_Spacing
#702
Amisnapat
closed
3 years ago
1
Feature extraction from the whole dataset which contains DICOM files
#701
DrraBL
closed
2 years ago
3
[FEAT EXTRACTION]
#700
HowardEMorgan
closed
3 years ago
5
[FEAT EXTRACTION] voxel-based extraction, resampling, and kernel size
#699
erin5116
closed
2 years ago
1
disable scientific notation when batch processing results
#698
gmadevs
closed
2 years ago
1
4D Casting Error
#697
salimkanoun
closed
3 years ago
13
Comparison Pyradiomics GLCM x Scikit- Image GLCM
#696
Guiandreis
closed
2 years ago
1
[FEAT EXTRACTION]There are many ways of calculating texture features from an ROI spanning more than one slice. For example, features can be computed from each 2D directional matrix and averaged over 2D directions and slices, or features can be calculated from a single matrix after merging 2D directional matrices per slice, and then averaged over slices. Does PyRadiomics enable a choice of approach and if so, which method was chosen?
#695
louherbert
closed
2 years ago
1
[FEAT EXTRACTION]: glrm & glcm only return 1 value instead of 14 (13 directions + mean)
#694
LHuysmans
closed
2 years ago
3
[FEAT EXTRACTION] Segmentation fault (core dumped) error
#693
arpitadu
closed
2 years ago
2
[FEAT EXTRACTION] Cannot reproduce some feature extraction metrics
#692
mattwarkentin
closed
3 years ago
2
[FEAT EXTRACTION]
#691
gnketiah
closed
2 years ago
2
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