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AMICI-dev
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AMICI
Advanced Multilanguage Interface to CVODES and IDAS
https://amici.readthedocs.io/
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Enable setting constraints on state variables
#2340
dweindl
closed
6 months ago
1
Feature 2327 constraints
#2339
dweindl
closed
6 months ago
0
Fix uncaught C++ exception in runAmiciSimulation
#2338
dweindl
closed
6 months ago
1
GHA: use dateutil from pypi
#2337
dweindl
closed
6 months ago
1
Fix type annotations in swig-wrapper
#2336
dweindl
closed
6 months ago
0
Allow setting MaxConvFails and MaxNonlinIters on solvers
#2335
dweindl
closed
6 months ago
1
ReturnData::J
#2334
dweindl
closed
6 months ago
0
Allow setting MaxConvFails
#2333
dweindl
closed
6 months ago
0
Fix size check in `Model::setStateIsNonNegative`
#2332
dweindl
closed
6 months ago
1
ReturnDataView AttributeError: messages
#2331
dweindl
closed
6 months ago
0
Update references
#2330
dweindl
closed
4 months ago
1
Handling conservation laws via solver constraints
#2329
dweindl
opened
6 months ago
3
Always include timepoints in NaN/Inf warnings
#2328
dweindl
closed
6 months ago
0
Handling (non-negativity) constraints
#2327
dweindl
closed
6 months ago
3
Conservation laws for non-constant species & constant species
#2326
dweindl
opened
6 months ago
1
Conservation laws for non-constant species for models with RateRules
#2325
dweindl
opened
6 months ago
0
Refactor de_export, extract DEModel
#2324
dweindl
closed
6 months ago
1
Refactor: Move amici.de_model to amici.de_model_components
#2323
dweindl
closed
6 months ago
1
Deterministic ordering of source files in generated CMakeLists.txt
#2322
dweindl
closed
6 months ago
1
Refactor de_export.py, extract C++ function info to cxx_functions.py
#2321
dweindl
closed
6 months ago
1
Result of amici.de_export.DEModel.sparseeq sometimes contains zeros
#2320
dweindl
closed
6 months ago
1
Refactor de_export.py, extract _codegen.model_class
#2319
dweindl
closed
6 months ago
1
CMake: update BLAS detection
#2318
dweindl
closed
6 months ago
1
Refactor: smoother conversion from SUNMatrixWrapper to SUNMatrix
#2317
dweindl
closed
6 months ago
1
Upgrade to SuiteSparse 7.6
#2316
dweindl
closed
6 months ago
1
Refactor de_export.py, extract model compilation
#2315
dweindl
closed
6 months ago
1
Refactor de_export.py, extract template functions
#2314
dweindl
closed
6 months ago
1
Cache remote files for tests
#2313
dweindl
closed
6 months ago
1
Refactor DEModel, remove SbmlImporter dependency
#2312
dweindl
closed
6 months ago
1
Refactor DEExporter/DEModel/csc_matrix
#2311
dweindl
closed
6 months ago
1
GHA: only try to publish docker image if secrets are set
#2310
dweindl
closed
6 months ago
1
Release 0.22.0
#2309
dweindl
closed
6 months ago
1
Refactor DEModel, remove SbmlImporter dependency
#2308
dweindl
closed
6 months ago
0
Refactor de_export.py, extract sympy_utils.py
#2307
dweindl
closed
6 months ago
1
Refactor de_export.py
#2306
dweindl
closed
6 months ago
0
Don't eliminate parameters that are initial assignment targets (pt2)
#2305
dweindl
closed
6 months ago
1
Don't eliminate parameters that are initial assignment targets (pt1)
#2304
dweindl
closed
6 months ago
1
Split expressions into static and dynamic
#2303
dweindl
closed
6 months ago
5
Upgrade SuiteSparse
#2302
dweindl
closed
6 months ago
0
Add .gitignore to model directories
#2301
dweindl
closed
6 months ago
1
gitignore amici model directories
#2300
dweindl
closed
6 months ago
1
Skip unnecessary toposorting in `DEModel._collect_heaviside_roots`
#2299
dweindl
closed
6 months ago
1
Fix redundant calls to Model::fdwdx from Model_ODE::fJ
#2298
dweindl
closed
6 months ago
1
Fix MANIFEST.in warning
#2297
dweindl
closed
6 months ago
1
Fix `ENABLE_AMICI_DEBUGGING=TRUE` not working with MSVC
#2296
dweindl
closed
6 months ago
1
More informative error message for ReturnDataView.by_id
#2295
dweindl
closed
6 months ago
1
GHA: update deploy_protected.yml
#2294
dweindl
closed
6 months ago
1
GHA: Skip codecov action on pushes to forks
#2293
dweindl
closed
6 months ago
1
Refactor DEModel.splines -> DEModel._splines
#2292
dweindl
closed
6 months ago
1
Fix missing toposort after rateOf-substitutions in `w`
#2291
dweindl
closed
6 months ago
1
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