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AMICI-dev
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AMICI
Advanced Multilanguage Interface to CVODES and IDAS
https://amici.readthedocs.io/
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Doc: Fix headings in ExampleJax
#2371
dweindl
closed
8 months ago
3
Model::checkFinite - exclude timepoints
#2370
dweindl
closed
6 months ago
0
Doc: Fix title in ExampleJax
#2369
dweindl
closed
8 months ago
0
Allow subselection of state variables for steady-state simulations
#2368
dweindl
closed
6 months ago
0
Doc: Add example for Solver.setContstraints and Model.setStateIsNonNegative
#2367
dweindl
opened
8 months ago
0
Log stacktraces only in debug mode
#2366
dweindl
closed
8 months ago
1
Fix type annotations in swig-wrappers (again)
#2365
dweindl
closed
8 months ago
1
Added amici.petab.conditions to readthedocs
#2364
PaulJonasJost
closed
8 months ago
2
Skip recreating N_Vector in AmiVector::copy
#2363
dweindl
closed
8 months ago
1
Fix Solver::dky_ initialization
#2362
dweindl
closed
8 months ago
1
Fix issues with paths containing blanks for sundials
#2361
dweindl
closed
8 months ago
1
Enable specifying maximum solver step size
#2360
dweindl
closed
8 months ago
1
SBML import: Evaluate initial assignments
#2359
dweindl
closed
8 months ago
0
Enable specifying maximum solver step size
#2358
dweindl
closed
8 months ago
0
CMake: Fix/cleanup BLAS linking
#2357
dweindl
closed
8 months ago
1
Fix venv related installation issues
#2356
FFroehlich
closed
8 months ago
4
Fix buildAmici.sh & installAmiciSource.sh to work with system-python
#2355
dweindl
closed
8 months ago
0
CMake: fix blas linking
#2354
dweindl
closed
8 months ago
0
Add new return code constant LSETUP_FAIL
#2353
dweindl
closed
8 months ago
1
Fix in-place building of model wheels
#2352
dweindl
closed
8 months ago
1
Update dataframes import/export
#2351
FFroehlich
closed
8 months ago
2
Make is-zero-checks compatible with the upcoming sympy>1.12
#2350
dweindl
closed
8 months ago
1
Improve debugging info in ReturnData
#2349
dweindl
closed
8 months ago
1
ReturnData: remove protected data members
#2348
dweindl
closed
1 month ago
1
Always include timepoints in NaN/Inf warnings
#2347
dweindl
closed
8 months ago
1
Add Solver::get_current_time
#2346
dweindl
closed
8 months ago
2
Fix petab import: initial assignment targets as constant parameters
#2345
dweindl
closed
8 months ago
3
Fix type annotations in swig-wrappers
#2344
dweindl
closed
8 months ago
1
Fix swig/std_unique_ptr.i
#2343
dweindl
closed
8 months ago
1
Fix missing import in `amici/petab/petab_import.py`
#2342
plakrisenko
closed
8 months ago
1
Fix ReturnDataView AttributeError: messages
#2341
dweindl
closed
8 months ago
1
Enable setting constraints on state variables
#2340
dweindl
closed
8 months ago
1
Feature 2327 constraints
#2339
dweindl
closed
8 months ago
0
Fix uncaught C++ exception in runAmiciSimulation
#2338
dweindl
closed
8 months ago
1
GHA: use dateutil from pypi
#2337
dweindl
closed
8 months ago
1
Fix type annotations in swig-wrapper
#2336
dweindl
closed
8 months ago
0
Allow setting MaxConvFails and MaxNonlinIters on solvers
#2335
dweindl
closed
8 months ago
1
ReturnData::J
#2334
dweindl
closed
8 months ago
0
Allow setting MaxConvFails
#2333
dweindl
closed
8 months ago
0
Fix size check in `Model::setStateIsNonNegative`
#2332
dweindl
closed
8 months ago
1
ReturnDataView AttributeError: messages
#2331
dweindl
closed
8 months ago
0
Update references
#2330
dweindl
closed
6 months ago
1
Handling conservation laws via solver constraints
#2329
dweindl
opened
8 months ago
3
Always include timepoints in NaN/Inf warnings
#2328
dweindl
closed
8 months ago
0
Handling (non-negativity) constraints
#2327
dweindl
closed
8 months ago
3
Conservation laws for non-constant species & constant species
#2326
dweindl
opened
8 months ago
1
Conservation laws for non-constant species for models with RateRules
#2325
dweindl
opened
8 months ago
0
Refactor de_export, extract DEModel
#2324
dweindl
closed
8 months ago
1
Refactor: Move amici.de_model to amici.de_model_components
#2323
dweindl
closed
8 months ago
1
Deterministic ordering of source files in generated CMakeLists.txt
#2322
dweindl
closed
8 months ago
1
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