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ARUP-NGS
/
BMFtools
Barcoded Molecular Families
MIT License
22
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8
forks
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Gzipped output
#55
dnbaker
closed
8 years ago
0
Err bug fixes, bmftools vet supports vcf.gz, vcf and bcf.
#54
dnbaker
closed
8 years ago
0
bmftools depth
#53
dnbaker
closed
8 years ago
0
Raw Coverage Tool
#52
dnbaker
closed
8 years ago
2
Forgotten include + other updates
#51
dnbaker
closed
8 years ago
0
Unit tests!
#50
dnbaker
closed
8 years ago
0
bmftools dmp: read from multiple fastqs per read
#49
dnbaker
closed
8 years ago
1
Dev
#48
dnbaker
closed
8 years ago
0
Quality String
#47
dnbaker
closed
8 years ago
0
License, cleanup
#46
dnbaker
closed
8 years ago
0
Dev
#45
dnbaker
closed
8 years ago
0
Dev
#44
dnbaker
closed
8 years ago
0
Merge Dev: Core functionality in C
#43
dnbaker
closed
8 years ago
1
Dev
#42
dnbaker
closed
9 years ago
0
New multi-threaded DMP Implementation
#41
dnbaker
closed
9 years ago
0
Parallelizing
#40
dnbaker
closed
9 years ago
0
Method for distinguishing PCR-induced errors from sequencing errors
#39
dnbaker
closed
8 years ago
1
Parallelize fastq marking with byte offsets
#38
dnbaker
closed
9 years ago
1
QC Fail flag for small families
#37
dnbaker
closed
9 years ago
1
Insert size vs. allele analysis
#36
dnbaker
closed
9 years ago
1
Compare NS/MS consenses
#35
dnbaker
closed
8 years ago
1
Quality Score Bootstrapping From PhiX Data
#34
dnbaker
closed
8 years ago
1
SNV caller
#33
dnbaker
closed
8 years ago
2
Multi-threading creates multiple threads, but processes these on a single core
#32
progee
closed
8 years ago
2
Parallelization suggestions to increase demultiplex processing speeds
#31
progee
closed
8 years ago
6
Argument Sketcher Overhaul (Fix command-line argument parsing)
#30
progee
closed
8 years ago
2
Gzip final fastq output
#29
progee
closed
8 years ago
2
Clean up intermediate fastq files as soon as they're no longer needed
#28
progee
closed
8 years ago
1
Stable
#27
dnbaker
closed
9 years ago
0
Bug fixes for release
#26
dnbaker
closed
9 years ago
0
Get stable up to speed
#25
dnbaker
closed
9 years ago
0
Bug fix for command-line option for bmftools dmp
#24
dnbaker
closed
9 years ago
0
BAM positional inference rescue
#23
dnbaker
closed
8 years ago
1
Replace BAM tagging step with a massive sed call
#22
dnbaker
closed
9 years ago
1
Merge unit test into stable for release.
#21
dnbaker
closed
9 years ago
0
Fixed BCFastq unit test, should work fine
#20
dnbaker
closed
9 years ago
0
Rewrite of a lot of stuff
#19
dnbaker
closed
9 years ago
0
Dev
#18
dnbaker
closed
9 years ago
0
MD:Z: tag created by MPA
#17
dnbaker
closed
9 years ago
1
Fixed BCFastq.
#16
dnbaker
closed
9 years ago
0
Dev
#15
dnbaker
closed
9 years ago
5
Getuniquekmersbed
#14
progee
closed
9 years ago
0
Getuniquekmersbed
#13
progee
closed
9 years ago
1
From __future__ import division
#12
dnbaker
closed
9 years ago
2
Dev
#11
dnbaker
closed
9 years ago
0
Dev
#10
dnbaker
closed
9 years ago
0
MPA works!
#9
dnbaker
closed
9 years ago
0
Fixed SNVCrawler
#8
dnbaker
closed
9 years ago
0
Crawler Work. Moving back to dev branch - I got very confused.
#7
dnbaker
closed
9 years ago
0
Things I thought got pushed into master already
#6
dnbaker
closed
9 years ago
0
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