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AlexTISYoung
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snipar
Imputation of parental genotypes, inference of sibling IBD segments, family based GWAS, and polygenic score analyses.
MIT License
24
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5
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imp_indices.nonzero()[0] instead of imp_indices to solve the inconsistency between numpy and h5py pkgs
#33
imahdimir
closed
12 months ago
0
Update simulate.py
#32
imahdimir
closed
1 year ago
0
Issue with Calculated Scores and Effects in snipar
#31
PandaPowell
closed
1 year ago
7
Bump scipy from 1.7.1 to 1.10.0
#30
dependabot[bot]
opened
1 year ago
0
Memory Allocation Error in impute.py
#29
AnnabelPerry
closed
1 year ago
4
KeyError: 'InfType' in impute.py
#28
AnnabelPerry
closed
1 year ago
3
ibd.py genetic map errors
#27
AnnabelPerry
closed
1 year ago
4
IndexError: index 3 is out of bounds for axis 2 with size 3
#26
GiulioCentorame
closed
1 year ago
2
Bump gitpython from 3.1.24 to 3.1.30
#25
dependabot[bot]
opened
1 year ago
0
Error：Less than 50% of SNPs have genetic positions in genetic map file
#24
sherryfan030
closed
1 year ago
3
Include source distribution in PyPi
#23
GiulioCentorame
closed
2 years ago
1
Imputing missing parental genotype
#22
jtahir
closed
2 years ago
3
merge master into grandpar
#21
AlexTISYoung
closed
2 years ago
0
Grandpar
#20
AlexTISYoung
closed
2 years ago
0
Generic bgen sample IDs issue
#19
junmingguan
closed
2 years ago
0
Bump numpy from 1.21.1 to 1.22.0
#18
dependabot[bot]
closed
2 years ago
1
Installing on M1 Macbook Pro
#17
michaelbennett99
closed
1 year ago
1
Bump numpy from 1.19.3 to 1.21.0
#16
dependabot[bot]
closed
2 years ago
1
Inspecting (possibly best-call) imputed parental genotypes?
#15
sjoerdvanalten
closed
3 years ago
2
hap.kin0 not found
#14
sjoerdvanalten
closed
3 years ago
2
Ibd
#13
AlexTISYoung
closed
3 years ago
0
Batch f gwas
#12
AlexTISYoung
closed
3 years ago
0
fix bug in recording chromosomes of SNPs
#11
AlexTISYoung
closed
3 years ago
0
Batch f gwas
#10
AlexTISYoung
closed
3 years ago
1
Fgwas bgen
#9
AlexTISYoung
closed
3 years ago
1
negative imputed genotype
#8
yystat
closed
4 years ago
2
Runtime estimates for imputation step?
#7
ccrobertson
closed
4 years ago
2
Input file formats for impute_runner.py
#6
ccrobertson
closed
4 years ago
3
Effective sample size not found in GWAS output
#5
yystat
closed
4 years ago
8
Singular matrix Error when running fGWAS.py
#4
yystat
closed
4 years ago
3
IndexError in fGWAS.py when the number of SNPs in observed bim files not equal to the number in imputed data
#3
yystat
closed
4 years ago
4
AttributeError: 'NoneType' object has no attribute 'dumps' when running impute_runner.py
#2
yystat
closed
4 years ago
11
Warning message of "count_A1" was not set
#1
yystat
closed
4 years ago
2