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AlexsLemonade
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OpenPBTA-analysis
The analysis repository for the Open Pediatric Brain Tumor Atlas Project
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Update KR table with SnpSift
#1611
sjspielman
closed
2 years ago
1
update table 2 per KAC suggestions
#1610
jharenza
closed
2 years ago
4
Add notebook for authorship TSV and update workflow
#1609
sjspielman
closed
2 years ago
0
GHA: Updated git contribution stats
#1608
alexslemonade-docs-bot
closed
2 years ago
1
GHA: Updated git contribution stats
#1607
alexslemonade-docs-bot
closed
2 years ago
1
Create release of this repo prior to submission
#1606
jaclyn-taroni
closed
2 years ago
1
GHA: Updated git contribution stats
#1605
alexslemonade-docs-bot
closed
2 years ago
1
GHA: Updated git contribution stats
#1604
alexslemonade-docs-bot
closed
2 years ago
1
Add steps for filing a manuscript PR with author metadata
#1603
jaclyn-taroni
closed
2 years ago
2
GHA: Updated git contribution stats
#1602
alexslemonade-docs-bot
closed
2 years ago
0
Differences in mitochondrially-encoded gene expression between RNA-seq samples sequenced at BGI@CHOP vs. NantOmics
#1601
jaclyn-taroni
opened
2 years ago
1
add Yang Yang to module contributions file
#1600
jharenza
closed
2 years ago
1
Updated analysis: count-contributions to include Yang Yang as a module contributor
#1599
jharenza
closed
2 years ago
4
GHA: Updated git contribution stats
#1598
alexslemonade-docs-bot
closed
2 years ago
0
Table 2: update TMB/make germline variant names consistent
#1597
jharenza
closed
2 years ago
3
Script to run manuscript analyses
#1596
sjspielman
closed
2 years ago
9
Script for running analyses after release
#1595
sjspielman
closed
2 years ago
4
Script to run analyses after release
#1594
sjspielman
closed
2 years ago
1
Add script to run analyses not used in figures
#1593
sjspielman
closed
2 years ago
4
GHA: Updated git contribution stats
#1592
alexslemonade-docs-bot
closed
2 years ago
0
Updated analysis: Remove NF1 from Table 2
#1591
jharenza
closed
2 years ago
2
GHA: Updated git contribution stats
#1590
alexslemonade-docs-bot
closed
2 years ago
1
Automatically file PR with new author order to OpenPBTA-manuscript repository
#1589
jaclyn-taroni
closed
2 years ago
0
Fix directory name in count-contributions .gitignore
#1588
jaclyn-taroni
closed
2 years ago
1
GHA: Updated git contribution stats
#1587
alexslemonade-docs-bot
closed
2 years ago
1
Updated analysis: Key Resources Table
#1586
jharenza
closed
2 years ago
2
Update `count-contributions` to not count the bot
#1585
sjspielman
closed
2 years ago
4
Update generate-figures.sh to run scripts instead of copy certain panels
#1584
sjspielman
closed
2 years ago
4
Update compiled FigureS6
#1583
sjspielman
closed
2 years ago
0
Updated compiled Figure 5
#1582
sjspielman
closed
2 years ago
1
Re-compile figure S6
#1581
sjspielman
closed
2 years ago
0
Re-compile figure 5
#1580
sjspielman
closed
2 years ago
0
Recompiled S4
#1579
sjspielman
closed
2 years ago
1
GHA: Updated git contribution stats
#1578
alexslemonade-docs-bot
closed
2 years ago
1
add germline tools to KR table/update table 2
#1577
jharenza
closed
2 years ago
9
Update generate-figures.sh
#1576
sjspielman
closed
2 years ago
0
Move immune-deconv figure code
#1575
sjspielman
closed
2 years ago
5
Update compiled Figure 3
#1574
sjspielman
closed
2 years ago
0
Recompiled Figure 4 with new heatmap
#1573
sjspielman
closed
2 years ago
0
Re-compile Figure 4
#1572
sjspielman
closed
2 years ago
0
Re-compile Figure S4
#1571
sjspielman
closed
2 years ago
0
Figure script for mutational-signatures heatmap (2/2)
#1570
sjspielman
closed
2 years ago
1
New mutational-signatures figures script (1/2)
#1569
sjspielman
closed
2 years ago
8
Re-compile Figure 3
#1568
sjspielman
closed
2 years ago
0
Pull out `mutational-signature` figure code
#1567
sjspielman
closed
2 years ago
1
Update panel 3E order to match 3A
#1566
sjspielman
closed
2 years ago
0
Reorder S2 panels H-I by median
#1565
sjspielman
closed
2 years ago
6
Update KR table with germline annotation software and versions
#1564
jharenza
closed
2 years ago
2
Figure S2 H-I are no longer ordered by median TMB
#1563
jharenza
closed
2 years ago
3
Add notebook for setting manuscript author order
#1562
jaclyn-taroni
closed
2 years ago
2
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