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AlexsLemonade
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OpenPBTA-analysis
The analysis repository for the Open Pediatric Brain Tumor Atlas Project
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Recompiled Figure 3 with new panel D
#1561
sjspielman
closed
2 years ago
1
Updated compiled Figure S3
#1560
sjspielman
closed
2 years ago
1
Compiled Fig2 with Illustrator
#1559
sjspielman
closed
2 years ago
0
GHA: Updated git contribution stats
#1558
alexslemonade-docs-bot
closed
2 years ago
1
Re-compile Figure 2 with Illustrator
#1557
sjspielman
closed
2 years ago
0
Fix oncoprint bugs and S3A
#1556
sjspielman
closed
2 years ago
4
Re-generate panel S3A
#1555
sjspielman
closed
2 years ago
1
Update Table 1 to use broad_histology_display
#1554
sjspielman
closed
2 years ago
2
Update Table 1 to use broad_histology_display
#1553
sjspielman
closed
2 years ago
0
update Figure 3D to separate out "Other" cancer groups
#1552
jharenza
closed
2 years ago
4
Compiled Figure 5 for V22
#1551
sjspielman
closed
2 years ago
4
Compiled Figure S2 for V22
#1550
sjspielman
closed
2 years ago
5
Recompiled figure 1
#1549
sjspielman
closed
2 years ago
0
Figure S3A includes the wrong groups and `n_per_cancer_group.tsv` has two "Other" rows
#1548
jharenza
closed
2 years ago
4
Compiled Figure S6 for V22
#1547
sjspielman
closed
2 years ago
3
Re-compile Figure 1
#1546
jharenza
closed
2 years ago
0
Update N cell lines in 1A
#1545
jharenza
closed
2 years ago
0
Compiled Figure 4 for V22
#1544
sjspielman
closed
2 years ago
0
Separate analyses from figures script
#1543
sjspielman
closed
2 years ago
4
Compiled Figure 4 for V22
#1542
sjspielman
closed
2 years ago
1
GHA: Updated git contribution stats
#1541
alexslemonade-docs-bot
closed
2 years ago
1
Try to fix `workflow_dispatch` trigger in count contributions GHA workflow
#1540
jaclyn-taroni
closed
2 years ago
0
Compiled Figure S5 for V22
#1539
sjspielman
closed
2 years ago
2
Recompile Figure S4 for V22
#1538
sjspielman
closed
2 years ago
0
Update interaction counts
#1537
jashapiro
closed
2 years ago
0
Rerun the count-contributions module with real stats
#1536
jaclyn-taroni
closed
2 years ago
4
TP53 panels updated with v22 tp53
#1535
sjspielman
closed
2 years ago
1
Re-run survival with updated TP53 for V22
#1534
sjspielman
closed
2 years ago
1
GHA: Updated git contribution stats
#1533
alexslemonade-docs-bot
closed
2 years ago
0
GHA: Updated git contribution stats
#1532
alexslemonade-docs-bot
closed
2 years ago
1
V22 compiled Figure S3
#1531
sjspielman
closed
2 years ago
4
V22 Compiled Figure 2
#1530
sjspielman
closed
2 years ago
5
Re-run survival module
#1529
sjspielman
closed
2 years ago
0
Update TP53 figures
#1528
sjspielman
closed
2 years ago
0
Re-generate snv-callers panels with V22
#1527
sjspielman
closed
2 years ago
1
Re-run TP53 module with correct flag
#1526
sjspielman
closed
2 years ago
1
V22 update ns for manuscript
#1525
jharenza
closed
2 years ago
3
Updated analysis: sample distribution ns for manuscript
#1524
jharenza
closed
2 years ago
1
Count git contributions to analysis modules, total commits every Wednesday via GHA workflow
#1523
jaclyn-taroni
closed
2 years ago
1
Update "Other embryonal tumor" abbreviation
#1522
sjspielman
closed
2 years ago
1
Compiled Figure 3 for V22
#1521
sjspielman
closed
2 years ago
1
Update 1B and recompile Figure 1
#1520
sjspielman
closed
2 years ago
3
Update oncoprint figures for V22
#1519
sjspielman
closed
2 years ago
2
Update cancer display abbreviations
#1518
sjspielman
closed
2 years ago
3
Update Figure 1B with new abbreviations
#1517
sjspielman
closed
2 years ago
0
Update cancer group abbreviations for V22
#1516
sjspielman
closed
2 years ago
0
Re-generate S5 panels
#1515
sjspielman
closed
2 years ago
9
Copy interaction plot panel into figures/pdfs/
#1514
sjspielman
closed
2 years ago
0
V22 supplementary UMAP panels
#1513
sjspielman
closed
2 years ago
1
Update tmb-compare panels for v22
#1512
sjspielman
closed
2 years ago
1
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