issues
search
AlexsLemonade
/
OpenPBTA-analysis
The analysis repository for the Open Pediatric Brain Tumor Atlas Project
Other
99
stars
67
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Add Table 1 "Total" row
#1661
sjspielman
closed
1 year ago
0
Re-assess quantiseq results at tumor purity threshold
#1660
sjspielman
closed
1 year ago
1
Re-assess GSEA results at tumor purity threshold
#1659
sjspielman
closed
1 year ago
1
UMAPs without mitochondria
#1658
sjspielman
closed
1 year ago
4
EXTEND: re-analyze trends at tumor purity threshold
#1657
sjspielman
closed
1 year ago
6
Revision: Update compiled FigS5
#1656
sjspielman
closed
1 year ago
0
Add TERTp into Fig S5
#1655
sjspielman
closed
1 year ago
1
Revision: Update FigS5B-C with TERTp samples
#1654
sjspielman
closed
1 year ago
0
TERTp mutations and EXTEND scores
#1653
sjspielman
closed
1 year ago
3
Revision: Replace "Ependymal tumor(s)" --> "Ependymoma" in figures
#1652
jharenza
closed
1 year ago
2
Revision: update telomerase analysis to assess whether samples with TERTp have high scores
#1651
jharenza
closed
1 year ago
4
add sum of tumors subtyped by broad histology
#1650
jharenza
closed
1 year ago
1
GHA: Updated git contribution stats
#1649
alexslemonade-docs-bot
closed
1 year ago
2
add v23 release notes (final N for release)
#1648
jharenza
closed
1 year ago
2
Merge 5+/n into EPN branch
#1647
jaclyn-taroni
closed
1 year ago
1
Update OpenPBTA study in Pedcbio to v23
#1646
jharenza
closed
1 year ago
3
Update CAVATICA project to v23 once released
#1645
jharenza
closed
1 year ago
2
v23 create ci testing files
#1644
jharenza
closed
1 year ago
0
Revision: Update Table 1 to include Patient Ns
#1643
jharenza
closed
1 year ago
0
Revision: Updates to sample distribution analysis module
#1642
jharenza
closed
1 year ago
0
MRAN will be retired July 1, 2023
#1641
jaclyn-taroni
opened
1 year ago
0
V23 integrate (9/n)
#1640
jharenza
closed
1 year ago
3
V23 compile (8/n)
#1639
jharenza
closed
1 year ago
0
v23 epn add YAP1--MAML2 to fusions list and YAP1 calling, rerun (4/n)
#1638
jharenza
closed
1 year ago
0
v23 LGG (updating to 7/n)
#1637
jharenza
closed
1 year ago
0
v23 ews, neurocytoma, hgg (updating to 6/n)
#1636
jharenza
closed
1 year ago
0
v23 chordoma (updating to 5/n)
#1635
jharenza
closed
1 year ago
0
V23 mb subtyping (3/n)
#1634
jharenza
closed
1 year ago
0
v23 tp53 score (2/n)
#1633
jharenza
closed
1 year ago
0
V23 gsea
#1632
jharenza
closed
1 year ago
1
v23 run generate analysis files (1/n)
#1631
jharenza
closed
1 year ago
3
Revision: tumor purity threshold after sample removal
#1630
sjspielman
closed
1 year ago
1
Revision: Add metadata about co-extracted vs single-extraction samples
#1629
sjspielman
closed
1 year ago
2
Revision: Recalculate and assess quanTIseq scores at threshold
#1628
sjspielman
closed
1 year ago
0
Revision: Run and assess relevant survival models at threshold
#1627
sjspielman
opened
1 year ago
1
Revision: Run and assess GSVA results at threshold
#1626
sjspielman
closed
1 year ago
2
Revision: Recalculate EXTEND scores as re-assess at threshold
#1625
sjspielman
closed
1 year ago
0
Revision: Run TP53 classifier and assess scores at tumor fraction threshold
#1624
sjspielman
closed
1 year ago
0
GHA: Updated git contribution stats
#1623
alexslemonade-docs-bot
closed
1 year ago
0
Initiate tumor purity module
#1622
sjspielman
closed
1 year ago
12
Revision: Tumor purity and transcriptomics exploration
#1621
sjspielman
closed
1 year ago
10
Revision: Explore tumor purity metadata
#1620
sjspielman
closed
1 year ago
0
update EPN fusion gene `MAML2` in fusion summary module
#1619
jharenza
closed
1 year ago
0
New data release to handle EPN fusion encoding
#1618
sjspielman
closed
1 year ago
1
UMAPs highlighting sequencing center
#1617
sjspielman
closed
1 year ago
5
Revision: UMAP colored by sequencing center
#1616
sjspielman
closed
1 year ago
0
Tag a new release upon resubmission
#1615
sjspielman
closed
1 year ago
1
Metadata mismatches (age, tumor descriptor, diagnosis) between download and CAVATICA
#1614
jaclyn-taroni
closed
1 year ago
9
GHA: Updated git contribution stats
#1613
alexslemonade-docs-bot
closed
1 year ago
0
GHA: Updated git contribution stats
#1612
alexslemonade-docs-bot
closed
1 year ago
1
Previous
Next