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AlexsLemonade
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OpenPBTA-analysis
The analysis repository for the Open Pediatric Brain Tumor Atlas Project
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Figure S7 Zenodo CSVs
#1711
sjspielman
closed
1 year ago
0
Zenodo CSVs: S2H-I and S6A-D
#1710
sjspielman
closed
1 year ago
1
Zenodo CSVs: Figure S3C,D,E and S5
#1709
sjspielman
closed
1 year ago
2
Zenodo CSV: Figure 5 and part of S6
#1708
sjspielman
closed
1 year ago
1
Figure 4 Zenodo CSVs
#1707
sjspielman
closed
1 year ago
3
Zenodo CSVs: Figure 3 and Figure S4
#1706
sjspielman
closed
1 year ago
1
First set of zenodo CSVs
#1705
sjspielman
closed
1 year ago
1
Prepare for Zenodo tables: Update tables organization
#1704
sjspielman
closed
1 year ago
1
Fix polya/stranded barplot
#1703
sjspielman
closed
1 year ago
0
Tag Docker image associated with manuscript
#1702
jaclyn-taroni
closed
1 year ago
1
Figure S7 panel fix
#1701
sjspielman
closed
1 year ago
0
Revision: Update Figure 4H y-axis
#1700
jharenza
closed
1 year ago
2
Fig S7 UMAP panel with both polyA and stranded
#1699
sjspielman
closed
1 year ago
4
Figure S7: Add new panels A and C
#1698
sjspielman
closed
1 year ago
2
Re-compile figure S7
#1697
sjspielman
closed
1 year ago
0
Figure S7: Include sequencing center UMAP
#1696
sjspielman
closed
1 year ago
0
Figure S7 panel: UMAP from both library types
#1695
sjspielman
closed
1 year ago
0
Figure S7 panel: Barplot across RNA library and cancer groups
#1694
sjspielman
closed
1 year ago
0
New release associated with second resubmission
#1693
jaclyn-taroni
closed
1 year ago
1
Assemble files for new Zenodo submission
#1692
jaclyn-taroni
closed
1 year ago
7
Revise S7 to include information about RNA-seq batch effects
#1691
jaclyn-taroni
closed
1 year ago
2
Add missing middle initial
#1690
jaclyn-taroni
closed
1 year ago
0
Updated table S2 with oncoprint alterations
#1689
sjspielman
closed
1 year ago
1
Update interaction Ns
#1688
sjspielman
closed
1 year ago
3
Update ms N's notebook
#1687
sjspielman
closed
1 year ago
0
Figure S2 with white background
#1686
sjspielman
closed
1 year ago
1
Code changes from running V23 on AWS
#1685
sjspielman
closed
1 year ago
0
Compiled figure S7
#1684
sjspielman
closed
1 year ago
2
V23 compiled figures
#1683
sjspielman
closed
1 year ago
1
Updates to `run-manuscript-analyses.sh` and samples --> tumor
#1682
sjspielman
closed
1 year ago
2
Update Figure S3 for V23
#1681
sjspielman
closed
1 year ago
0
Revision: Big Run on AWS
#1680
sjspielman
closed
1 year ago
4
Revision: Re-run for manuscript, with tumor purity analyses
#1679
sjspielman
closed
1 year ago
0
Tumor purity supp panels
#1678
sjspielman
closed
1 year ago
1
Generate V23 figures
#1677
sjspielman
closed
1 year ago
3
Revision: V23 compiled figures
#1676
sjspielman
closed
1 year ago
1
Update Figure S3
#1675
sjspielman
closed
1 year ago
0
Revision: V23 figure panels
#1674
sjspielman
closed
1 year ago
2
add TERT SV info to telomerase plot script
#1673
jharenza
closed
1 year ago
6
V23 manuscript run
#1672
sjspielman
closed
1 year ago
3
Panels for a tumor purity figure, part 1
#1671
sjspielman
closed
1 year ago
1
Tumor purity tp53 notebook
#1670
sjspielman
closed
1 year ago
11
Recompiled S5 with TERTp regressions
#1669
sjspielman
closed
1 year ago
1
UMAP at tumor purity threshold
#1668
sjspielman
closed
1 year ago
1
Revision: UMAP at tumor purity threshold
#1667
sjspielman
closed
1 year ago
2
Use Ependymoma instead of Ependymal tumor in broad histology display palette
#1666
jaclyn-taroni
closed
1 year ago
0
Revision: Assemble a supplemental figure comprised of tumor purity threshold panels
#1665
jaclyn-taroni
closed
1 year ago
2
Update TP53 module to accommodate tumor purity filtering
#1664
sjspielman
closed
1 year ago
2
Add tumor purity util filtering function
#1663
sjspielman
closed
1 year ago
1
Add tumor purity util function
#1662
sjspielman
closed
1 year ago
0
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