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AlexsLemonade
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alsf-scpca
Management and analysis tools for ALSF Single-cell Pediatric Cancer Atlas data.
BSD 3-Clause "New" or "Revised" License
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Encrypt AMI storage
#29
jashapiro
closed
3 years ago
0
Update workflows to use SCPCR ids and locations
#28
jashapiro
closed
3 years ago
0
Move raw files to ID-based locations
#27
jashapiro
closed
3 years ago
0
Compare to CellRanger
#26
jashapiro
closed
3 years ago
2
Automate checking of md5 hashes
#25
jashapiro
closed
3 years ago
1
WIP: compare alevin & kallisto quantification
#24
jashapiro
closed
3 years ago
5
Kallisto processing example
#23
jashapiro
closed
3 years ago
0
Initial benchmark analysis
#22
jashapiro
closed
3 years ago
4
Add kallisto workflow
#21
jashapiro
closed
4 years ago
0
Add full decoy transciptomes
#20
jashapiro
closed
4 years ago
0
Discussion: Universal Sample IDs and metadata table
#19
jashapiro
closed
3 years ago
1
Initial alevin benchmarking result
#18
jashapiro
closed
4 years ago
4
Add Alevin processing script
#17
jashapiro
closed
4 years ago
2
Add tx2gene and mitochondrial files
#16
jashapiro
closed
4 years ago
0
Add a docker image definition with R tools
#15
jashapiro
closed
4 years ago
0
Explore Launch Templates
#14
jashapiro
closed
3 years ago
0
Create an R docker image for workflows
#13
jashapiro
closed
4 years ago
0
Create salmon partial selective alignment index
#12
jashapiro
closed
3 years ago
2
Create salmon selective alignment index
#11
jashapiro
closed
3 years ago
0
create tx2gene files and mitochondrial gene lists
#10
jashapiro
closed
4 years ago
0
Benchmark salmon/alevin and kallisto
#9
jashapiro
closed
3 years ago
4
Make batch jobs scale on failure
#8
jashapiro
opened
4 years ago
2
Add kallisto indexing
#7
jashapiro
closed
4 years ago
0
Add full transcriptome
#6
jashapiro
closed
4 years ago
0
Add salmon index workflow
#5
jashapiro
closed
4 years ago
0
Discussion: mapping and indexing options
#4
jashapiro
closed
2 years ago
6
Create reference files and indexes
#3
jashapiro
closed
4 years ago
2
Add base terraform config for batch
#2
jashapiro
closed
4 years ago
4
Create FUNDING.yml
#1
jashapiro
closed
4 years ago
0
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