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AlexsLemonade
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refinebio
Refine.bio harmonizes petabytes of publicly available biological data into ready-to-use datasets for cancer researchers and AI/ML scientists.
https://www.refine.bio/
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Update smasher dependencies
#3233
arkid15r
closed
1 year ago
0
Fix affymetrix "Timeout was reached: Connection timed out after 10001 milliseconds"
#3232
arkid15r
closed
1 year ago
1
Fix downloaders tests
#3231
arkid15r
closed
1 year ago
0
Add renv scripts
#3230
arkid15r
closed
1 year ago
0
Update foreman requirements
#3229
arkid15r
closed
1 year ago
1
Update common tests
#3228
arkid15r
closed
1 year ago
0
Update common requirements
#3227
arkid15r
closed
1 year ago
0
Update Docker base image
#3226
arkid15r
closed
1 year ago
0
Update API requirements and run_tests.sh
#3225
arkid15r
closed
1 year ago
0
Update Github actions checkout to v3
#3224
arkid15r
closed
1 year ago
0
Generate new test data for salmon tools
#3223
davidsmejia
closed
1 year ago
0
Fix "Error in loadNamespace(name) : there is no package called ‘BiocInstaller’" error
#3222
arkid15r
closed
1 year ago
1
Error: install of package 'pd.feinberg.hg18.me.hx1' failed [error code 1]
#3221
arkid15r
closed
1 year ago
1
Fix "is.na() applied to non-(list or vector) of type 'NULL'" for salmon image build
#3220
arkid15r
closed
1 year ago
1
Fix test_affy_agilent "Function found when exporting methods from the namespace ‘XVector’ which is not S4 generic: ‘endoapply’" error
#3219
arkid15r
closed
1 year ago
2
Dataset Request SRP130149
#3218
alexslemonade-bot
opened
1 year ago
0
Dataset Request GSE97508
#3217
alexslemonade-bot
opened
1 year ago
0
Dataset Request GSE48257
#3216
alexslemonade-bot
opened
1 year ago
0
Dataset Request GSE48257
#3215
alexslemonade-bot
opened
1 year ago
0
Fix downloader_no_op_tests MissingSchema exception
#3214
arkid15r
closed
1 year ago
3
Fix test_salmon Missing salmontools and tximport test data
#3213
arkid15r
closed
1 year ago
3
Fix test_smasher AssertionError: Processor job failed, but for an incorrect reason issue
#3212
arkid15r
closed
1 year ago
1
Fix test_illumina No such file or directory: 'file' error
#3211
arkid15r
closed
1 year ago
1
Bump django from 3.2.15 to 3.2.18 in /common
#3210
dependabot[bot]
closed
1 year ago
2
Bump django from 3.2.15 to 3.2.18 in /workers/data_refinery_workers/downloaders
#3209
dependabot[bot]
closed
1 year ago
2
Bump django from 3.2.15 to 3.2.18 in /api
#3208
dependabot[bot]
closed
1 year ago
2
Fix test_smasher module 'numpy.random' has no attribute 'Generator' error
#3207
arkid15r
closed
1 year ago
1
Fix no_op NameError: name 'testing_utils' is not defined
#3206
arkid15r
closed
1 year ago
1
Fix failing test_smasher tests
#3205
arkid15r
closed
1 year ago
1
Fix test_transcriptome failing tests
#3204
arkid15r
closed
1 year ago
2
Fix test_foreman failing job
#3203
arkid15r
closed
1 year ago
2
Fix commont_tests PostgreSQL version not supported error
#3202
arkid15r
closed
1 year ago
1
Fix test_common markupsafe issue
#3201
arkid15r
closed
1 year ago
1
Sync feature branches
#3200
arkid15r
closed
1 year ago
0
Fix typo in container registry domain
#3199
p-
closed
1 year ago
0
Refinebio Processing Cost Estimation Tool
#3198
davidsmejia
opened
1 year ago
0
Create tests to ensure that we are using biocunductor 3.6 and R 3.4.2
#3197
davidsmejia
opened
1 year ago
0
Sync feature/automatic-accessions branch w/ dev
#3196
arkid15r
closed
1 year ago
0
Bump django from 3.2.15 to 3.2.17 in /api
#3195
dependabot[bot]
closed
1 year ago
1
Bump django from 3.2.15 to 3.2.17 in /workers/data_refinery_workers/downloaders
#3194
dependabot[bot]
closed
1 year ago
1
Bump django from 3.2.15 to 3.2.17 in /common
#3193
dependabot[bot]
closed
1 year ago
1
Rollback Bioconductor to ver 3.6
#3192
davidsmejia
closed
1 year ago
1
Dataset Request GSE134869
#3191
alexslemonade-bot
opened
1 year ago
0
Dataset Request GSE134869
#3190
alexslemonade-bot
opened
1 year ago
0
Fix transcriptome PostgreSQL version not supported error
#3189
arkid15r
closed
1 year ago
1
Fix no_op PostgreSQL version not supported error
#3188
arkid15r
closed
1 year ago
1
Fix affymetrix "no space left on device" error
#3187
arkid15r
closed
1 year ago
3
Advanced Search Support
#3186
davidsmejia
opened
1 year ago
2
Dataset Request SRP050091
#3185
alexslemonade-bot
opened
1 year ago
0
Migrate R dependencies to `renv`
#3184
arkid15r
closed
1 year ago
0
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