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AlexsLemonade
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refinebio
Refine.bio harmonizes petabytes of publicly available biological data into ready-to-use datasets for cancer researchers and AI/ML scientists.
https://www.refine.bio/
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Fix MicroArray end to end tests
#3278
arkid15r
opened
1 year ago
1
Bump docker login-action from v1 to v2
#3277
arkid15r
closed
1 year ago
0
Bump setup-terraform action from v1 to v2
#3276
arkid15r
closed
1 year ago
0
Add a temporary workaround for failing end2end test
#3275
arkid15r
closed
1 year ago
0
Update Foreman end2end test runner location
#3274
arkid15r
closed
1 year ago
0
Update forman test_runner location in end to end tests
#3273
davidsmejia
closed
1 year ago
1
Migrate deprecated `set-output` command
#3272
arkid15r
closed
1 year ago
0
Remove terraform AWS provider default profile
#3271
arkid15r
closed
1 year ago
0
Fix `volume_directory` permissions
#3270
arkid15r
closed
1 year ago
0
Fix terraform deploy error
#3269
arkid15r
closed
1 year ago
0
Fix invalid version error
#3268
arkid15r
closed
1 year ago
0
Pin setuptools to version 65.7
#3267
arkid15r
closed
1 year ago
0
Fix `Invalid version` error
#3266
arkid15r
closed
1 year ago
0
Fix keys path
#3265
arkid15r
closed
1 year ago
0
Update refine.bio public key
#3264
arkid15r
closed
1 year ago
0
Fix test_tximport.R path
#3263
davidsmejia
closed
1 year ago
0
Cherry pick missing commits
#3262
arkid15r
closed
1 year ago
0
pull salmontools test data from s3
#3261
davidsmejia
closed
1 year ago
0
squash merge changes
#3260
davidsmejia
closed
1 year ago
0
Testing API throttling is inconsistent
#3259
davidsmejia
closed
11 months ago
0
Add rebased feature/automatic-accession
#3258
davidsmejia
closed
1 year ago
0
Merge automatic accessions feature branch into dev
#3257
arkid15r
closed
1 year ago
0
Clean up unused keys
#3256
arkid15r
closed
1 year ago
0
Add refine.bio GPG signing key
#3255
arkid15r
closed
1 year ago
0
Fix common, foreman tests
#3254
arkid15r
closed
1 year ago
0
Deploy to staging
#3253
davidsmejia
closed
10 months ago
0
Dataset Request SRP151148
#3252
alexslemonade-bot
opened
1 year ago
1
Fix "rpy2 in API mode cannot be built..." error
#3251
arkid15r
closed
1 year ago
1
Revisit refine.bio dependencies
#3250
arkid15r
opened
1 year ago
0
Add GEOMeta DB support
#3249
arkid15r
closed
1 year ago
0
Fix RNA Seq agent accession gathering process
#3248
arkid15r
opened
1 year ago
0
GEO meta DB availability
#3247
arkid15r
opened
1 year ago
0
Is there a reason ERP001942 (GEUVADIS) has so many missing samples?
#3246
leipzig
opened
1 year ago
7
Dataset Request SRP153927
#3245
alexslemonade-bot
opened
1 year ago
0
Dataset Request SRP153927
#3244
alexslemonade-bot
opened
1 year ago
0
Migrate to new ArrayExpress API
#3243
arkid15r
opened
1 year ago
1
Pull salmontools test data from s3
#3242
davidsmejia
closed
1 year ago
0
Update affymetrix dependencies
#3241
arkid15r
closed
1 year ago
0
Update compendia dependencies
#3240
arkid15r
closed
1 year ago
2
Update illumina docker image and R dependencies
#3239
arkid15r
closed
1 year ago
0
Update no_op docker image and R dependencies.
#3238
arkid15r
closed
1 year ago
0
Update salmon dependencies
#3237
arkid15r
closed
1 year ago
0
Fix affymetrix "It appears that the file ... is corrupted" error
#3236
arkid15r
closed
1 year ago
1
Missing gene expression matrix in download for GSE83864
#3235
jaclyn-taroni
opened
1 year ago
1
Update transcriptome Docker image
#3234
arkid15r
closed
1 year ago
0
Update smasher dependencies
#3233
arkid15r
closed
1 year ago
0
Fix affymetrix "Timeout was reached: Connection timed out after 10001 milliseconds"
#3232
arkid15r
closed
1 year ago
1
Fix downloaders tests
#3231
arkid15r
closed
1 year ago
0
Add renv scripts
#3230
arkid15r
closed
1 year ago
0
Update foreman requirements
#3229
arkid15r
closed
1 year ago
1
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