issues
search
AllenInstitute
/
neuron_morphology
Tools for working with single-neuron morphological reconstructions
https://neuron-morphology.readthedocs.io/en/latest/
Other
19
stars
8
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Axon parent validation fix
#225
MatthewMallory
closed
4 months ago
1
Merge latest dev
#224
gouwens
closed
4 months ago
1
Use GitHub actions for CI and publishing
#223
gouwens
closed
4 months ago
0
Incorporate latest dev changes
#222
gouwens
closed
4 months ago
1
Update dolfinx API calls for newer version
#221
gouwens
closed
4 months ago
0
clear gmsh between initializations
#220
emjoyce
closed
4 months ago
1
Neuron reconstruction team to use this version of neuron_morphology to quality control swc and marker files before uploading
#219
MatthewMallory
opened
1 year ago
0
fix: failing to measure diameter of nonexistent compartment
#218
MatthewMallory
opened
1 year ago
0
Soma layer depths new tools
#217
tmchartrand
opened
1 year ago
0
Layer depths update
#216
MatthewMallory
closed
1 year ago
0
Update requirements
#215
MatthewMallory
closed
1 year ago
1
change streamline req from gmsh to python-gmsh
#214
MatthewMallory
closed
1 year ago
1
Fix for newer fenicsx ufl
#213
gouwens
closed
1 year ago
1
Bumpversion
#212
fcollman
closed
1 year ago
1
updating install instructions
#211
fcollman
closed
1 year ago
0
corrected null case
#210
MatthewMallory
closed
1 year ago
1
Fix windows
#209
fcollman
closed
1 year ago
0
Science staging
#208
fcollman
closed
1 year ago
1
adds cloudfiles to read/write swc files
#207
fcollman
closed
1 year ago
0
Dolfinx switch
#206
gouwens
closed
1 year ago
0
adding optional installs for calculating streamlines
#205
fcollman
closed
1 year ago
0
Add signed bias option and add feature tests
#204
gouwens
closed
1 year ago
0
Soma features extraction failing due to no morphology attribute
#203
anukratinigam
opened
2 years ago
0
Install improvements
#202
fcollman
closed
1 year ago
3
bumping argschema off an alpha release
#201
fcollman
closed
1 year ago
1
Bugfix/lambda reqs
#200
MatthewAitken
closed
3 years ago
0
Release 1.0.1 (#197)
#199
MatthewAitken
closed
1 year ago
1
Bugfix/1.0.1 failing tests
#198
MatthewAitken
closed
3 years ago
1
Release 1.0.1
#197
MatthewAitken
closed
3 years ago
1
make release of neuron morphology
#196
gnayuy
opened
3 years ago
1
Generate transformed SWC files for Q2 2021 release
#195
wbwakeman
closed
3 years ago
3
Compute features outside visual areas
#194
wbwakeman
opened
3 years ago
0
circleci failures: Unable to open file, etc
#193
tmchartrand
opened
3 years ago
0
Layer depths update
#192
tmchartrand
opened
3 years ago
0
Snap polygons updates
#191
tmchartrand
opened
3 years ago
2
snap_polygons FromLimsSource functionality broken
#190
tmchartrand
opened
3 years ago
1
use snap_polygons without pia/wm paths
#189
tmchartrand
opened
3 years ago
4
enable absolute depth measurements by saving path length
#188
tmchartrand
opened
3 years ago
0
soma stem histogram feature and test file
#187
MatthewMallory
closed
1 year ago
1
Fix breaking neuron_morphology issues
#186
wbwakeman
opened
3 years ago
0
Adding statistical feature to capture "mean and stdev of bifurcation distances"
#185
MatthewMallory
closed
1 year ago
2
EM transform and features
#184
wbwakeman
opened
4 years ago
0
Create static image of neuron reconstruction
#183
wbwakeman
opened
4 years ago
0
ZeroDivisionError on fMOST registered reconstructions
#182
wbwakeman
opened
4 years ago
0
Create static image of neurite cortical layer histogram
#181
wbwakeman
opened
4 years ago
0
Create named profile for AWS credentials file for neuron_morphology
#180
wbwakeman
opened
4 years ago
0
Make parent-daughter ratio NaN-safe
#179
wbwakeman
opened
4 years ago
0
Investigate features affected by reconstruction node sampling differences
#178
wbwakeman
opened
4 years ago
0
Add Hausdorff dimension to morphological features
#177
MKRangers
closed
4 years ago
2
moves ccf reference into new persistent reference bucket
#176
MatthewAitken
closed
3 years ago
2
Next