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AllenNeuralDynamics
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aind-smartspim-stitch
Stitching and fusion pipeline in the cloud
MIT License
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fixing folder output based on new data convention
#32
camilolaiton
closed
1 year ago
0
Info dump for flat field correction
#31
miketaormina
closed
6 months ago
2
Metadata JSONs don't carry over
#30
miketaormina
closed
1 year ago
2
Channel organization and OME-Zarr
#29
miketaormina
opened
1 year ago
4
Neuroglancer clamps values to 8 bit
#28
miketaormina
opened
1 year ago
1
Default display of stitched volumes in neuroglancer is not intuitive
#27
galenlynch
opened
1 year ago
0
Low frequency banding in stitched volumes, likely a product of the destriping process
#26
galenlynch
closed
6 months ago
9
Stitching artifacts
#25
galenlynch
closed
6 months ago
5
adding optional external copy
#24
camilolaiton
closed
1 year ago
0
Refactor SmartSPIM stitching capsule to generate metadata independently
#23
camilolaiton
closed
1 year ago
1
hex to string conversion
#22
camilolaiton
closed
1 year ago
0
Fixing color bug in stitching pipeline
#21
camilolaiton
closed
1 year ago
1
Perf upgrade dataschema
#20
camilolaiton
closed
1 year ago
0
Fix bug when we select a different image resolution in the SmartSPIM stitching package
#19
camilolaiton
closed
1 year ago
1
Feat ng colors
#18
jwong-nd
closed
1 year ago
1
adding new parameters to run file
#17
camilolaiton
closed
1 year ago
0
Validating tiles based on #14
#16
camilolaiton
closed
1 year ago
0
Default colors for OME Zarr files do not match spectral colors
#15
galenlynch
closed
1 year ago
2
Validate number of tiles per channel before processing data
#14
camilolaiton
closed
1 year ago
1
Data Validation
#13
miketaormina
closed
1 year ago
3
updating processing folder to new structure
#12
camilolaiton
closed
1 year ago
0
Feat sphinx documentation
#11
camilolaiton
closed
1 year ago
0
Optimize stitching of expanded SmartSPIM datasets for version 1.2
#10
camilolaiton
closed
1 year ago
0
Fix 3d chunks writer
#9
camilolaiton
closed
1 year ago
0
refactoring stitcher package
#8
camilolaiton
closed
1 year ago
0
adding new stitching parameters and order channel
#7
camilolaiton
closed
1 year ago
0
looking for dataset root path in create_ng_link method
#6
camilolaiton
closed
1 year ago
0
Fix details
#5
camilolaiton
closed
1 year ago
0
Fix OME-Zarr chunk size issue for stitching module
#4
camilolaiton
closed
1 year ago
5
Feature/ng link
#3
camilolaiton
closed
1 year ago
1
Adding argschema and tiff to ome-zarr
#2
camilolaiton
closed
1 year ago
0
create terastitcher module
#1
sharmishtaa
closed
1 year ago
1