AmpliconSuite AmpliconClassifier issues

AmpliconSuite / AmpliconClassifier

Classify output of AmpliconArchitect to detect types of focal amplifications present

BSD 2-Clause "Simplified" License

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issues

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inconsistency between the ecDNA counts reported by annotated_cycles and ecDNA_counts.tsv

#20 newpest opened 2 months ago
3
ValueError: not enough values to unpack (expected 5, got 4) - Error when running ampliconclassifier inside ampliconsuite

#19 DSchreyer opened 6 months ago
1
interpreting the results of AmpliconClassifier

#18 eesiribloom opened 7 months ago
1
add initial ecdna context code

#17 jluebeck closed 7 months ago
0
No [prefix]_feature_entropy.tsv files in AC output?

#16 edceeyuchen closed 10 months ago
2
Feature interval bed should include copy number values from AA graph file

#15 jluebeck opened 12 months ago
0
About the difference between the classfication of the current version and the legacy_natgen_2020

#14 xieduo7 opened 1 year ago
1
+1 end position in _ampliconx_ecDNA_x_intervals.bed in dir _classification_bed_files

#13 solo7773 opened 1 year ago
5
Complex - BFB - ecDNA - Differences

#12 DSchreyer opened 1 year ago
1
complexity scores

#11 alhafidzhamdan closed 1 year ago
2
why AC get different cycle from AA-cycle file?

#10 panxiaoguang closed 2 years ago
5
Added AGG as backend for writing plots to file

#9 asntech closed 2 years ago
1
which method used for classifing the amplicon segments?

#8 panxiaoguang closed 2 years ago
5
Identifying HSRs

#7 prashanthid opened 2 years ago
2
Feature Request: Change Directory of uploads

#6 Toseph closed 2 years ago
1
how to compare with CIRCLE-seq

#5 panxiaoguang closed 3 years ago
1
About 'Complex non-cyclic'

#4 FromSoSimple opened 3 years ago
6
More explanation about the output？

#3 zhang919 closed 3 years ago
5
Can AmpliconClassifier output the classification of each Cycle in the "*_amplicon_cycles.txt" file?

#2 kerenzhou062 closed 3 years ago
7
Classification

#1 alhafidzhamdan closed 1 year ago
13