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AndersenLab
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wi-gatk
The new GATK-based pipeline for wild isolate C. elegans strains
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update main.nf
#32
jnyaanga
closed
2 years ago
0
Fix remote issues
#31
katiesevans
closed
2 years ago
0
Add html report
#30
katiesevans
closed
2 years ago
0
new updates from master
#29
katiesevans
closed
2 years ago
0
Restructure
#28
danrlu
closed
3 years ago
0
fix annotation and channel operation
#27
danrlu
opened
3 years ago
0
remove sites with all 0 before annotation step
#26
danrlu
closed
4 years ago
0
Skip het polarization for mtDNA
#25
danrlu
closed
4 years ago
0
Almost the final version...
#24
danrlu
closed
4 years ago
0
lcr
#23
danielecook
closed
4 years ago
1
Add strain-level VCFs to output
#22
danielecook
opened
4 years ago
0
container works on quest
#21
danrlu
closed
4 years ago
4
17 het pol and genome
#20
danielecook
closed
4 years ago
0
Add BCSQ query file
#19
danielecook
opened
4 years ago
0
Integrate genomes-nf reference
#18
danielecook
closed
4 years ago
0
Add script for downloading genome + containerize + het polarization
#17
danielecook
closed
4 years ago
0
Update to wi-gatk
#16
danrlu
closed
4 years ago
1
wi-gatk report
#15
danielecook
opened
4 years ago
1
Investigate options for CSQ annotations
#14
danielecook
opened
4 years ago
2
Dev
#13
danielecook
closed
4 years ago
0
Remove popgen components
#12
danielecook
closed
4 years ago
1
Integrate Somalier
#11
danielecook
closed
4 years ago
0
Generate strain-level TSVs
#10
danielecook
closed
4 years ago
1
Generate mod tracks for CeNDR
#9
danielecook
closed
4 years ago
1
Tajima Track
#8
danielecook
closed
4 years ago
1
Review remaining CeNDR outputs
#7
danielecook
closed
4 years ago
1
Integrate multiqc
#6
danielecook
closed
4 years ago
2
Add script for generating / fetching test data set and reference genome
#5
danielecook
closed
4 years ago
2
Add BCSQ Annotation from BCFtools or other haplotype aware annotation
#4
danielecook
closed
4 years ago
0
Update Documentation
#3
danielecook
opened
4 years ago
1
Add PD1074 genome
#2
danielecook
closed
4 years ago
3
add sequence context annotation to VCF
#1
danielecook
closed
4 years ago
1