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AndrewCRMartin
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absplit
Code to split an antibody PDB file into Fv fragments with their antigens
GNU General Public License v3.0
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Need to use different contact counts for haptens
#33
AndrewCRMartin
opened
6 months ago
0
Change FAA files to be two entries
#32
AndrewCRMartin
opened
1 year ago
0
Add resolution and R factor to header
#31
AndrewCRMartin
closed
1 year ago
1
6e9q - heavy chains in SEQRES but ATOM records missing
#30
AndrewCRMartin
closed
1 year ago
4
5wb1 - OK but chain duplicated.
#29
AndrewCRMartin
closed
1 year ago
1
5kov - problem with H chain
#28
AndrewCRMartin
closed
1 year ago
3
Summary of problem files
#27
AndrewCRMartin
closed
1 year ago
1
pdb6xun_2PH should just be pdb6xun_2H
#26
AndrewCRMartin
closed
1 year ago
1
Add HET chains to antigen chain list in REMARK 950
#25
AndrewCRMartin
opened
1 year ago
1
6wix losing SEQRES during postprocessing
#24
AndrewCRMartin
closed
1 year ago
2
7fej - not recognizing the H/L pairing
#23
AndrewCRMartin
closed
1 year ago
3
Problem in numbering some files leads to missing PDB chains
#22
AndrewCRMartin
closed
1 year ago
1
antigen chain miss labelled (h becomes H in ATOM records)
#21
biochunan
closed
1 year ago
1
missing antibody chains in some AbDb entries
#20
biochunan
closed
1 year ago
1
pdb6muf_0PH.mar: missing antibody
#19
biochunan
closed
1 year ago
2
pdb6ca6_0P and pdb6ca6_1P: no antigen present, chain-splitting issue
#18
biochunan
closed
1 year ago
1
pdb2fr4_0PN: extra antigen "P"
#17
biochunan
closed
1 year ago
1
pdb6xun_2PH.mar: chain mapping, repeated HETATM, antigen type
#16
biochunan
closed
1 year ago
2
potential numbering issue: 5drx
#15
biochunan
closed
1 year ago
3
special case: 7jz4
#14
biochunan
closed
1 year ago
1
5wb1 special case
#13
AndrewCRMartin
closed
1 year ago
1
2znx is an scFv, not done properly
#12
AndrewCRMartin
closed
1 year ago
2
4nzt shouldn't be flagged as a complex
#11
AndrewCRMartin
closed
1 year ago
3
Special case 5gru
#10
AndrewCRMartin
closed
1 year ago
1
Special case 4hjj
#9
AndrewCRMartin
closed
1 year ago
2
Issues associated with .cho files
#8
biochunan
closed
2 years ago
1
SEQRES shorter than ATMSEQ
#7
AndrewCRMartin
closed
2 years ago
1
Chothia files empty or missing
#6
AndrewCRMartin
closed
1 year ago
7
Deal with non-Abs better
#5
AndrewCRMartin
opened
2 years ago
0
Bence Jones proteins aren't handled properly
#4
AndrewCRMartin
closed
2 years ago
3
Avoid xtal packing as complexes
#3
AndrewCRMartin
closed
2 years ago
3
HETATMs
#2
AndrewCRMartin
opened
2 years ago
0
NR Code
#1
AndrewCRMartin
closed
2 years ago
1