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ArcInstitute
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ScreenPro2
Flexible analysis of high-content CRISPR screening
https://screenpro2.rtfd.io
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address bugs in processing flow cytometry based screens
#98
isabelleliuu
closed
1 week ago
1
bug fixes in `buildPhenotypeData`
#97
abearab
closed
2 months ago
0
CLI related bugs
#96
abearab
opened
2 months ago
0
minor fixes
#95
abearab
closed
2 months ago
0
Add in accessibility for calculateDrugScreen
#94
chriswzou
closed
2 months ago
0
update ngs module to address bug
#93
isabelleliuu
closed
2 months ago
1
minor bug fixes
#92
abearab
closed
3 months ago
0
Add low count detection within pair-wise comparisons
#91
abearab
closed
3 months ago
0
collapse the gene-transcript indices into a single score for a gene by best p-value
#90
abearab
closed
3 months ago
1
new functions and sub-modules in `phenoscore` module
#89
abearab
closed
3 months ago
0
improvements in phenotype calculation
#88
abearab
closed
3 months ago
0
Write function to run robust ranking aggregation (RRA) algorithm
#87
abearab
closed
3 months ago
2
minor code improvements
#86
abearab
closed
3 months ago
0
enable extracting `genetable_collapsed` by leveraging guides targeting multiple transcripts of same gene
#85
abearab
closed
3 months ago
0
improvements in phenotype calculation
#84
abearab
closed
3 months ago
0
Implement empirical p-value formula by comparing with non-targeting distribution
#83
abearab
opened
3 months ago
2
Implement simple `stats.ttest_ind` test
#82
abearab
closed
3 months ago
2
code improvements and bug fixes
#81
abearab
closed
4 months ago
8
Formulate the "combined score" based on the given phenotypic scores and p-values.
#80
abearab
closed
3 months ago
0
Functions for common QC and phenotype level plots
#79
abearab
opened
4 months ago
1
fix a bug in `filterLowCounts`
#78
abearab
closed
4 months ago
0
update `filterLowCounts` behavior
#77
abearab
closed
4 months ago
0
minor changes in docs and codes
#76
abearab
closed
4 months ago
0
key changes and improvements
#75
abearab
closed
4 months ago
0
refactor modules and add new analysis features
#74
abearab
closed
4 months ago
0
Unexpected fold change direction in `phenoscore` analysis of recombinations
#73
abearab
closed
3 months ago
0
Implement methods for nominating synthetic lethal interactions
#72
abearab
opened
4 months ago
0
Add DESeq2 test as an option for differential analysis
#71
abearab
closed
4 months ago
0
UMI collapse
#70
abearab
opened
5 months ago
0
first release of CLI with `guidecounter` subcommand
#69
abearab
closed
5 months ago
0
update new `GuideCounter` class name in README
#68
abearab
closed
5 months ago
0
Fix bugs and improve code
#67
abearab
closed
5 months ago
0
fix env file for docs
#66
abearab
closed
5 months ago
0
update plotting code formats
#65
abearab
closed
5 months ago
0
improve options for low count filters and add data dashboard module
#64
abearab
closed
6 months ago
0
Functions to build data dashboard and interactive plots
#63
abearab
opened
6 months ago
1
Include automated version management
#62
abearab
closed
3 months ago
1
major code changes and logical improvements in analysis steps
#61
abearab
closed
6 months ago
1
Generate pseudogenes from negative control elements in the library
#60
abearab
closed
6 months ago
0
minor code and document improvements
#59
abearab
closed
6 months ago
0
bug fixes and code improvements
#58
abearab
closed
6 months ago
0
improve code organization for CLI
#57
abearab
closed
6 months ago
0
Load and explore results from ScreenProcessing
#56
abearab
closed
3 months ago
0
fix a bug in `fastq2count`
#55
abearab
closed
6 months ago
0
minor changes in docs
#54
abearab
closed
6 months ago
0
improve core functionalities for CLI
#53
abearab
closed
6 months ago
0
Define `platform` module and `ScreenPlatform` class
#52
abearab
closed
4 months ago
0
Standardized format of sample metadata
#51
abearab
closed
6 months ago
1
Reformat assays objects to be sub-class of `AnnData` class
#50
abearab
opened
6 months ago
1
Read and write objects as HDF5 files
#49
abearab
closed
6 months ago
0
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