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ArcInstitute
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ScreenPro2
Flexible analysis of high-content CRISPR screening
https://screenpro2.rtfd.io
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Unexpected fold change direction in `phenoscore` analysis of recombinations
#73
abearab
opened
7 hours ago
0
Implement methods for nominating synthetic lethal interactions
#72
abearab
opened
8 hours ago
0
Add DESeq2 test as an option for differential analysis
#71
abearab
opened
4 days ago
0
UMI collapse
#70
abearab
opened
1 week ago
0
first release of CLI with `guidecounter` subcommand
#69
abearab
closed
1 week ago
0
update new `GuideCounter` class name in README
#68
abearab
closed
1 week ago
0
Fix bugs and improve code
#67
abearab
closed
2 weeks ago
0
fix env file for docs
#66
abearab
closed
1 month ago
0
update plotting code formats
#65
abearab
closed
1 month ago
0
improve options for low count filters and add data dashboard module
#64
abearab
closed
1 month ago
0
Functions to build data dashboard and interactive plots
#63
abearab
opened
1 month ago
1
Include automated version management
#62
abearab
opened
1 month ago
1
major code changes and logical improvements in analysis steps
#61
abearab
closed
1 month ago
1
Generate pseudogenes from negative control elements in the library
#60
abearab
closed
1 month ago
0
minor code and document improvements
#59
abearab
closed
1 month ago
0
bug fixes and code improvements
#58
abearab
closed
1 month ago
0
improve code organization for CLI
#57
abearab
closed
1 month ago
0
Load and explore results from ScreenProcessing
#56
abearab
opened
1 month ago
0
fix a bug in `fastq2count`
#55
abearab
closed
1 month ago
0
minor changes in docs
#54
abearab
closed
1 month ago
0
improve core functionalities for CLI
#53
abearab
closed
1 month ago
0
Define `platform` module and `ScreenPlatform` class
#52
abearab
opened
1 month ago
0
Standardized format of sample metadata
#51
abearab
closed
1 month ago
1
Reformat assays objects to be sub-class of `AnnData` class
#50
abearab
closed
1 month ago
1
Read and write objects as HDF5 files
#49
abearab
closed
1 month ago
0
clarify references to elements in sgRNA library
#48
abearab
closed
2 months ago
0
mismatch allowance for sequence counting task
#47
abearab
opened
2 months ago
1
update `plotReplicateScatter` function
#46
abearab
closed
2 months ago
0
Question: library and sample format in cas9.py
#45
akshitasax
closed
2 months ago
6
major reformatting and introduce alpha version of CLI
#44
abearab
closed
2 months ago
1
Define `PooledScreens` and `GImaps` in assays module
#43
abearab
closed
2 months ago
0
Define `Counter` module for `fastq2count` tasks
#42
abearab
closed
2 months ago
0
Fix formatting for function comments
#41
abearab
closed
2 months ago
0
support cas12-screens
#40
abearab
closed
3 months ago
0
Process FASQ files for higher-order combinatorial perturbations
#39
abearab
closed
2 months ago
0
Improve NGS module
#38
abearab
closed
3 months ago
0
add features for processing single guide libraries
#37
abearab
closed
4 months ago
0
add draft fastq2counts functions for single-guide-design
#36
abearab
closed
4 months ago
1
Write CLI and draw step-by-step workflows
#35
abearab
closed
1 week ago
1
Reimplement `CRISPhieRmix` approch
#34
abearab
closed
3 months ago
0
Add z-score normalization option
#33
abearab
closed
4 months ago
1
Improve and fix `plotReplicateScatter` function
#32
abearab
closed
2 months ago
1
Add tutorials
#31
abearab
opened
5 months ago
0
Design relevant python objects
#30
abearab
opened
5 months ago
0
Create Issue forms
#29
abearab
opened
5 months ago
1
Design and implement `fastq2count` module
#28
abearab
closed
1 week ago
1
Include commonly used CRISPR library tables
#27
abearab
closed
4 months ago
0
Validating genome-scale guide RNA libraries
#26
abearab
closed
4 months ago
1
Split scripts for phenotype score calculation and statistical analysis
#25
abearab
closed
6 months ago
0
pytest fails without a clear reason
#24
abearab
closed
6 months ago
2
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