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ArcInstitute
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ScreenPro2
Flexible analysis of high-content CRISPR screening
https://screenpro2.rtfd.io
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Run phenoScore on each samples pairs to get phenotypes per replicates.
#23
abearab
closed
6 months ago
0
Phenotype scatter plot for replicates as a QC analysis
#22
abearab
closed
6 months ago
0
Workflow for FACS-based screens
#21
abearab
closed
4 months ago
1
Workflow for survival screens
#20
abearab
closed
4 months ago
0
Define "population doublings" column for input sample sheet
#19
abearab
closed
6 months ago
0
Sort and find top `n` guide per target
#18
abearab
closed
4 months ago
0
Z-score normalization relative to negative control distribution
#17
abearab
closed
4 months ago
2
Function to find and filter out low counts
#16
abearab
closed
6 months ago
1
Support genomic features and annotations for custom and common CRISPR libraries
#15
abearab
closed
4 months ago
1
Introduce `.pdata` matrix as part of assays objects
#14
abearab
closed
1 month ago
0
Implement workflows for common platforms and use cases
#13
abearab
closed
1 month ago
1
Extend methods in `phenoscore` and `phenostats` modules
#12
abearab
opened
6 months ago
1
Benjamini-Hochberg FDR calculation
#11
abearab
closed
3 months ago
1
Transparent methods for phenotype calculation and statistical analysis
#10
abearab
closed
3 months ago
1
Principal component analysis (PCA) of guide level phenotypes
#9
abearab
closed
2 months ago
0
Improve documentations
#8
abearab
opened
6 months ago
0
Add a section for background and references
#7
abearab
opened
6 months ago
0
Reword oligo to avoid confusion
#6
abearab
closed
2 months ago
0
Include citation(s)
#5
abearab
closed
3 months ago
1
Gold standard AUC/ROC hit comparison across pipelines
#4
abearab
opened
7 months ago
2
Provide example with a toy dataset
#3
abearab
opened
7 months ago
0
Define I/O for common CRISPR library platforms
#2
abearab
closed
2 months ago
0
Code and knowledge transfer from GilbertLabUCSF repository and issues
#1
abearab
closed
6 months ago
1
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