Atkinson-Lab Tractor issues

Atkinson-Lab / Tractor

Scripts for implementing the Tractor pipeline

MIT License

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issues

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Multi-ancestry meta-analysis

#38 sarahcolbert closed 1 month ago
1
v1.4.1 - add catcovarcollist argument & some log cleanup

#37 kscott-1 closed 2 months ago
0
Question regarding VCFs and issue with the R script

#36 EfraMP opened 3 months ago
3
add SE for LA term and alt allele term to output

#35 kscott-1 closed 3 months ago
0
Inclusion of stderr and other possible enhancements

#34 kscott-1 closed 3 months ago
0
allow for either .txt or .txt.gz hapdose files

#33 kscott-1 closed 3 months ago
0
No gzip support in run_tractor.R

#32 kscott-1 closed 3 months ago
0
Index error using imputed VCF when extracting tracts

#31 silviaadiz closed 2 months ago
6
Error while running run_tractor.R

#30 EfraMP closed 6 months ago
3
NaNs for some variants in output

#29 samreenzafer closed 6 months ago
5
Getting errors after running extract_tracts.py

#28 EfraMP closed 7 months ago
2
Differences in AF between original version and v 1.1.0

#27 nick338 closed 5 months ago
2
`extract_tracks.py`: NameError: name 'output_files' is not defined

#26 biona001 closed 8 months ago
7
RunTractor.py ERROR Phenotype ID must match with Hapdose file ID

#25 samreenzafer closed 8 months ago
2
Query cohort imputed with TOPMed reference panel (Michigan server hg38 build)

#24 samreenzafer closed 1 month ago
1
Possibility of outputting SNP effect variance in Tractor output

#23 nick338 closed 8 months ago
1
Version (number) of Tractor

#22 ZikunY closed 11 months ago
1
Dependency on RFMIX Output Format

#21 kscott-1 closed 9 months ago
2
IndexError: list index out of range

#20 ChrisK1988 closed 1 year ago
6
Related samples

#19 Wanying-Zhu closed 9 months ago
1
IndexError

#18 ZikunY closed 1 year ago
2
Hail does only linear and not logistic regression?

#17 guidebortoli closed 1 year ago
1
Does the pheno file accepts missing values for a variable/covariable?

#16 guidebortoli closed 1 year ago
1
Error message in the tutorial

#15 ZikunY closed 1 year ago
2
How were the painted karyograms made?

#14 Naughtoncolin closed 1 year ago
2
NaN output

#13 spaul-genetics closed 9 months ago
2
GWAS with genotype x phenotype interaction

#12 MrLocuace closed 5 months ago
1
Cannot find example of phenotype file

#11 MrLocuace closed 2 years ago
2
fix msp scan

#10 mike-w-wilson closed 2 years ago
0
Add arg to zip output

#9 mike-w-wilson closed 3 years ago
2
Switch from per chromosome to autosomes

#8 hidyverse closed 2 years ago
2
Example Hail code for binary traits

#7 secastel closed 2 years ago
6
Error in ExtractTracks.py Script

#6 EEPuckett closed 3 years ago
1
Update ExtractTracts to single script with passed number of ancestries

#5 mike-w-wilson closed 3 years ago
0
Fixed some typos, and modified code to write out header more efficiently

#2 sgagliano closed 4 years ago
0
Typo on line 34 of ExtractTracts-Flags.py

#1 sgagliano closed 3 years ago
1