Autodesk notebook-molecular-visualization issues

Autodesk / notebook-molecular-visualization

2D and 3D molecular visualization in Jupyter notebooks using 3DMol.js and D3.js

http://moldesign.bionano.autodesk.com

Apache License 2.0

75 stars 21 forks source link

issues

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How to plot xyz trajectory files obtained by running geometry optimization through xtb

#56 LukeTheWalker opened 3 months ago
0
Can atom indices be altered?

#55 alongd opened 1 year ago
0
Download 3d representation as voxel grid or points cloud

#54 tarungog opened 3 years ago
0
Problems rendering jupyter notebook widget

#53 psychemedia opened 6 years ago
0
Set up CI build system

#52 avirshup opened 6 years ago
0
Configurators

#51 avirshup closed 7 years ago
0
Update README, better notebook extension installation

#50 avirshup closed 7 years ago
0
Adds visual regression tests, numerous code fixes

#49 avirshup closed 7 years ago
0
normalmodes

#48 obrien951 opened 7 years ago
1
Py3

#47 avirshup closed 7 years ago
1
Adapts partially to Py3. Adds a known good npm/nodejs download channel.

#46 loriab opened 7 years ago
0
Py3

#45 avirshup closed 7 years ago
1
adding user=True to installing_nbext_py

#44 brandonkrull closed 7 years ago
2
Fix JSON conversion

#43 avirshup closed 7 years ago
0
Fix Color Pop-In Bug

#42 justinmc closed 7 years ago
2
Move MDT JSON converter into NBMolViz

#41 avirshup closed 7 years ago
0
Labels don't disappear when "label atoms" checkbox is deselected in GeometryBuilder widget

#40 avirshup closed 7 years ago
2
viewer.color_by is slow for large molecules

#39 avirshup opened 7 years ago
3
Orbitals not showing up

#38 avirshup opened 7 years ago
4
Upgrade ipywidgets

#37 justinmc closed 7 years ago
3
Selection Type Bug

#36 justinmc closed 7 years ago
3
MANIFEST.in improvement

#35 justinmc closed 7 years ago
1
Fix jsdeps Install Error

#34 justinmc closed 7 years ago
2
Dev environment fails to build

#33 avirshup closed 7 years ago
4
Atom selection not synchronized when clicking on the 3D representation

#32 avirshup closed 7 years ago
9
Add set_opacity 3d viewer method

#31 avirshup opened 7 years ago
0
Viewer ignores width and height keyword arguments

#30 avirshup opened 7 years ago
0
Ribbons representation not displaying for DNA

#29 avirshup opened 7 years ago
4
CI with Travis

#28 justinmc closed 7 years ago
11
Molecule3D Performance

#27 justinmc closed 7 years ago
1
Unable to use on Ubuntu

#26 bergwerf opened 7 years ago
1
Use correct names of nbmolviz2d/3d

#25 justinmc closed 7 years ago
0
Viewer performance regressions

#24 avirshup closed 7 years ago
3
ResidueSelector.selected_atoms and ResidueSelector.selected_residues regression

#23 avirshup closed 7 years ago
1
Nbmolviz2d/3d to React

#22 justinmc closed 7 years ago
3
Get RPC Removal Working in MDT

#21 justinmc closed 7 years ago
0
Selection Drilldown (prototype)

#20 justinmc closed 7 years ago
1
MDT / NBMolViz Remix

#19 justinmc opened 8 years ago
1
Replace npmcdn.com with unpkg.com

#18 npmcdn-to-unpkg-bot closed 8 years ago
4
Forcefield Assignment Viewer Should Work Without RPC

#17 justinmc closed 8 years ago
0
Trajectory Orbital Viewer Should Work Without RPC

#16 justinmc closed 8 years ago
0
Trajectory Viewer Should Work Without RPC

#15 justinmc closed 8 years ago
0
Orbital Visualizer Should Work Without RPC

#14 justinmc closed 8 years ago
0
Geometry Building Should Work Without RPC

#13 justinmc closed 8 years ago
1
Bond Selector Should Work Without RPC

#12 justinmc closed 8 years ago
1
Residue Selector Needs to Work without RPC

#11 justinmc closed 8 years ago
2
RPC to Data Binding

#10 justinmc closed 8 years ago
1
Abstract nbmolviz3d

#9 justinmc closed 8 years ago
7
Twisted 2d visualization

#8 justinmc opened 8 years ago
3
Readme Install Instructions Correction

#7 justinmc closed 8 years ago
2