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BCCDC-PHL
/
FluViewer
Tool for generating influenza A virus genome sequences from FASTQ data
https://bccdc-phl.github.io/FluViewer/
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Update env yaml to create self-contained FluViewer install in one step
#36
dfornika
closed
2 days ago
0
Update provided environment.yaml file to produce a self-contained and complete FluViewer conda env
#35
dfornika
closed
2 days ago
0
Add support for long (nanopore) read input
#34
dfornika
opened
5 days ago
0
Handle case where segment is missing while plotting scaffold
#33
dfornika
closed
5 days ago
0
Analysis fails when attempting to create a scaffolding plot for a segment for which there is no data.
#32
dfornika
closed
5 days ago
0
Bump version in preparation for next release
#31
dfornika
closed
6 days ago
0
allow output directory to be PWD
#30
jpalmer37
closed
6 days ago
1
Allow user to force writing outputs into existing output directory
#29
jpalmer37
closed
6 days ago
2
Add CLI option to easily obtain fluviewer version
#28
jpalmer37
closed
6 days ago
0
provide easier access to BCCDC-PHL/fluviewer version for provenance
#27
jpalmer37
closed
6 days ago
0
Fix issue where analysis fails if BLAST db hasn't been pre-built.
#26
dfornika
closed
6 days ago
0
Analysis fails when blast database files do not already exist
#25
dfornika
closed
6 days ago
0
Make bbnorm-based normalization optional
#24
dfornika
opened
1 week ago
1
Support analysis of Influenza B sequence data
#23
dfornika
opened
2 weeks ago
4
Add scaffolding plots
#22
dfornika
closed
3 weeks ago
0
Create plots to illustrate scaffolding process
#21
dfornika
closed
3 weeks ago
0
Expand/improve documentation
#20
dfornika
opened
3 weeks ago
0
Add docs workflow
#19
dfornika
closed
3 weeks ago
0
Update analysis diagram on README
#18
dfornika
closed
3 weeks ago
0
Reorganize outputs
#17
dfornika
closed
3 weeks ago
0
Generate documentation
#16
dfornika
closed
3 weeks ago
0
Add testing workflow
#15
dfornika
closed
4 weeks ago
0
Re-organize outputs by 'analysis stage'
#14
dfornika
closed
3 weeks ago
0
Add CI testing workflow(s)
#13
dfornika
closed
4 weeks ago
0
Adopt argparse for argument parsing, improve logging
#12
dfornika
closed
1 month ago
0
Improve logging
#11
dfornika
closed
1 month ago
0
Use argparse for command-line argument parsing
#10
dfornika
closed
1 month ago
0
simplify environment file
#9
dfornika
closed
1 month ago
0
Simplify `environment.yml` file
#8
dfornika
closed
1 month ago
0
Update to v0.1.11
#7
dfornika
closed
7 months ago
0
Make pip-installable
#6
dfornika
closed
7 months ago
0
Pull in latest FluViewer Release(s)
#5
dfornika
closed
7 months ago
0
Update samtools view -f flag from 3 to 1
#4
JamesZlosnik
closed
11 months ago
0
Coverage drop-outs leading to samples not being compete enough for tree
#3
JamesZlosnik
closed
11 months ago
0
Make pip-installable
#2
dfornika
closed
11 months ago
0
Make pip-installable
#1
dfornika
closed
11 months ago
0