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BIMSBbioinfo
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pigx_sars-cov-2
PiGx SARS-CoV-2 wastewater sequencing pipeline
GNU General Public License v3.0
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Enable guix pull for the install action
#165
jonasfreimuth
closed
1 year ago
0
Install action fails due to Guix interal issues
#164
jonasfreimuth
closed
1 year ago
0
Update VERSION for new release
#163
jonasfreimuth
closed
1 year ago
0
Fix na_if use
#162
jonasfreimuth
closed
1 year ago
0
Test failures with latest R
#161
rekado
closed
1 year ago
0
Clarification Database handling in README and Documentation
#160
vicfabienne
closed
1 year ago
5
Consider adapting long formats for output files
#159
alexg9010
opened
1 year ago
0
Step away from modifying column names
#158
alexg9010
opened
1 year ago
0
Better deconvolution error reporting
#157
jonasfreimuth
opened
1 year ago
0
Deconvolution stability
#156
jonasfreimuth
closed
1 year ago
0
Deconvolution step failing with custom mutation sheet
#155
charlesfoster
closed
1 year ago
3
Repo maintenance
#154
jonasfreimuth
closed
1 year ago
0
Fix error in dedupe mat fun when all cols are same
#153
jonasfreimuth
closed
1 year ago
1
Potential error in sigmat deduplication when all columns are the same
#152
jonasfreimuth
closed
1 year ago
0
No version referenced in the reports
#151
jonasfreimuth
opened
1 year ago
0
Fix & update sample report link
#150
jonasfreimuth
closed
1 year ago
0
Fix code echo in variantreport_per_sampe.Rmd
#149
jonasfreimuth
closed
1 year ago
0
Update README.md
#148
jonasfreimuth
closed
1 year ago
0
Minor fixes
#147
jonasfreimuth
closed
1 year ago
1
Update VERSION for new release
#146
jonasfreimuth
closed
1 year ago
0
Minor changes
#145
jonasfreimuth
closed
1 year ago
0
Minor fixes
#144
jonasfreimuth
closed
1 year ago
0
141 build workflow fails due to missing datatbases
#143
jonasfreimuth
closed
1 year ago
1
Add multiple starting files & deconvolution methods
#142
jonasfreimuth
closed
1 year ago
0
`build` workflow fails due to missing datatbases
#141
jonasfreimuth
closed
1 year ago
2
add setting of VERBOSE to Build step
#140
jonasfreimuth
closed
2 years ago
0
build action fails without explaining itself properly
#139
jonasfreimuth
closed
2 years ago
0
137 remove unused test data files
#138
jonasfreimuth
closed
2 years ago
0
Remove unused test data files
#137
jonasfreimuth
closed
2 years ago
0
Fix makefile am
#136
jonasfreimuth
closed
2 years ago
3
fix thresholding of samples by coverage
#135
jonasfreimuth
closed
2 years ago
0
Rule `create_overviewQC_table` takes needlessly long
#134
jonasfreimuth
opened
2 years ago
0
Allround improvements
#133
jonasfreimuth
closed
2 years ago
0
General improvements
#132
jonasfreimuth
closed
2 years ago
0
Separate scripts and reports
#131
jonasfreimuth
closed
2 years ago
0
Clean up r packages
#130
jonasfreimuth
closed
2 years ago
0
point automake flag to pigx-common m4 dir
#129
jonasfreimuth
closed
2 years ago
1
Set mutation covered percentage threshold in tests to 25
#128
jonasfreimuth
closed
2 years ago
3
Minor improvements
#127
jonasfreimuth
closed
2 years ago
0
point automake flag to pigx-common m4 dir
#126
jonasfreimuth
closed
2 years ago
1
update copyright year in pretty.txt
#125
jonasfreimuth
closed
2 years ago
1
Update example settings and sample sheet
#124
jonasfreimuth
closed
2 years ago
2
m4/ax_r_package.m4 is outdated
#123
rekado
closed
2 years ago
3
Minor fixes
#122
jonasfreimuth
closed
2 years ago
0
Separate scripts and reports
#121
jonasfreimuth
closed
2 years ago
2
Update example report in README
#120
vicfabienne
closed
1 year ago
3
update guix channel to commit 1c4241d
#119
jonasfreimuth
closed
2 years ago
1
Fix issue #111 test files in root dir
#118
jonasfreimuth
closed
2 years ago
0
make read coverage filter for mutations dynamically
#117
vicfabienne
closed
1 year ago
3
make running iVar/primer trimming optional
#116
vicfabienne
closed
1 year ago
1
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