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BIO-DIKU
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SeqScan
Pattern matching in biological sequences
GNU General Public License v2.0
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Protein data
#63
maasha
closed
8 years ago
1
Document PatternUnitCreator in pattern_unit_creator.h
#62
maasha
closed
8 years ago
1
Implement match anchors ^ and $
#61
maasha
opened
9 years ago
0
test_range_unit.cc
#60
maasha
opened
9 years ago
0
Nasty repeat bug
#59
maasha
closed
8 years ago
3
Modifiers revisited
#58
maasha
closed
9 years ago
1
remove test_fuzzy_sequence.cc
#57
maasha
closed
8 years ago
0
remove run_seqscan.cc
#56
maasha
closed
8 years ago
1
added extra constructor to res_matcher to avoid magic numbers
#55
maasha
closed
9 years ago
0
Benchmark dir restructure
#54
maasha
closed
9 years ago
1
Implement filter functionality
#53
maasha
opened
9 years ago
0
Implement multi-threading
#52
maasha
opened
9 years ago
0
dropped obsolete parser dir
#51
maasha
closed
9 years ago
0
reversed seq and pat in syntax examples
#50
maasha
closed
8 years ago
3
Add benchmark protein dataset
#49
maasha
closed
8 years ago
1
Add match group pattern to benchmarks
#48
maasha
closed
8 years ago
2
Fix benchmark gnuplot
#47
maasha
closed
8 years ago
1
Reverse pattern and seq in examples - and specify which is which for the first!
#46
maasha
closed
8 years ago
2
Feature kmp
#45
RasmusFonseca
closed
9 years ago
1
Feature integrate resmatcher
#44
RasmusFonseca
closed
9 years ago
0
Ambiguity matrices
#43
maasha
closed
9 years ago
0
Including FASTQ scores in output
#42
maasha
closed
9 years ago
1
Fixed failing test and warnings for TNFAs
#41
Telumehtar
closed
9 years ago
0
Res matcher
#40
maasha
closed
9 years ago
0
removed non-greedy operator stuff
#39
maasha
closed
9 years ago
0
Fasta reader
#38
RasmusFonseca
closed
9 years ago
4
Compile parser-generator with CMake
#37
RasmusFonseca
closed
9 years ago
2
Parser feature
#36
RasmusFonseca
closed
9 years ago
0
Default start position should be 1
#35
maasha
closed
8 years ago
3
Main options
#34
maasha
closed
9 years ago
0
Silence optparse native warnings
#33
maasha
opened
9 years ago
1
Pattern io
#32
maasha
closed
9 years ago
2
Replace io.cc and io.h with BioIO
#31
maasha
closed
9 years ago
1
Canonical way to get version
#30
maasha
opened
9 years ago
0
Bug in tnfa_start_state_512.cc types
#29
maasha
closed
9 years ago
0
Exception handling
#28
maasha
closed
9 years ago
1
Main file
#27
maasha
closed
9 years ago
0
test_tnfa_unit.cc:268: FAILED
#26
maasha
closed
9 years ago
0
test_backtrack_unit.cc:181: FAILED
#25
maasha
closed
9 years ago
1
Optparser
#24
maasha
closed
9 years ago
1
Travis integration
#23
AndreasDahl
closed
9 years ago
1
New TNFA model
#22
Telumehtar
closed
9 years ago
1
make of parser Makefile breaks
#21
maasha
closed
9 years ago
1
Move test dir
#20
maasha
closed
9 years ago
0
Collect benchmark data and plot
#19
maasha
closed
9 years ago
2
Parser makefile
#18
maasha
closed
9 years ago
0
Parser makefile
#17
maasha
closed
9 years ago
1
Linting
#16
maasha
closed
9 years ago
0
Use src/ as build basedir
#15
maasha
opened
9 years ago
0
Benchmark data script
#14
maasha
closed
9 years ago
0
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