issues
search
BayraktarLab
/
cell2location
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)
https://cell2location.readthedocs.io/en/latest/
Apache License 2.0
324
stars
58
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Model training failed
#156
xiaoxiaozhihuishu
closed
2 years ago
4
Error: 'cell2location' is not a package while importing libraries.
#153
Archanayd
closed
2 years ago
2
Performance reduction when training the Cell2location model with CPU in the latest version
#152
tomasgomes
closed
1 year ago
9
Interpretation of the deconvolution results
#151
Zhuang-Bio
closed
2 years ago
4
Failed to import cell2location in tutorial when colab has an update
#150
yxiaobme
closed
2 years ago
2
package incompatibility with scvi-tools beyond 0.15.0 when running RegressionModel (or tutorial syntax needs update)
#149
nancyliy
closed
2 years ago
2
cell abundance quantile
#148
wangjiawen2013
closed
1 year ago
2
plot spatial QC errors
#147
wangjiawen2013
closed
1 year ago
2
error during installation
#146
liukc19
closed
1 year ago
4
Module 'scvi.data' has no attribute 'setup_anndata'
#145
Rajarshi1001
closed
2 years ago
4
Exclusion of observed variables from posterior
#144
vitkl
opened
2 years ago
13
mod.samples & plot_genes_per_cell_type
#143
MertDemirdizen
closed
2 years ago
8
Cannot import cell2location: Failed in nopython mode pipeline (step: native lowering)
#142
98xy
closed
2 years ago
7
Cannot import cell2location
#141
elisulvaran
closed
2 years ago
2
Issues with gpu usage
#140
MertDemirdizen
closed
2 years ago
5
ModuleNotFoundError in singularity image in version cell2location-v0.06-alpha.sif
#137
CeliaLerma
closed
2 years ago
5
Errors while running colab tutorial
#136
narein97
closed
2 years ago
5
Posterior quantile detects minibatch plate vars
#135
vitkl
opened
2 years ago
1
ValueError when train the regression model using adata_ref
#134
huangluyujie
closed
2 years ago
4
Move cell2location-WTA (Nanostring) model and all pymc3 code to https://github.com/vitkl/SpaceJam.
#131
vitkl
closed
1 year ago
0
Issue with mod.plot_history graph
#130
rue1996
closed
1 year ago
2
Issue Importing Cell2Location - Completely Clean Env
#129
pranzatelli
closed
2 years ago
4
invalid values error in the GammaPoisson() for Reference data training process
#128
scarlettcanny0629
closed
2 years ago
4
Annotated snRNA-seq data - link to access?
#127
bhavyaac
closed
2 years ago
3
merge master
#126
vitkl
closed
2 years ago
0
Adapt models to scvi-tools v0.15
#125
justjhong
closed
2 years ago
8
Fixing various issues in docs
#124
vitkl
closed
2 years ago
0
Evaluating model like in the first tutorial
#123
Dantferno
closed
1 year ago
4
how to get output figures
#122
sadiexiaoyu
closed
1 year ago
2
what is tutorial_utils module?
#121
sadiexiaoyu
closed
1 year ago
1
error report when execute mod.train(max_epochs=250, train_size=1, lr=0.002, use_gpu=True)
#120
sadiexiaoyu
closed
1 year ago
1
download visium dataset problem
#119
sadiexiaoyu
closed
2 years ago
0
Option to treat y_s as detection probability
#118
vitkl
opened
2 years ago
0
Issue with saving the reference signature results
#116
rue1996
closed
1 year ago
9
Issue templates
#115
yozhikoff
closed
2 years ago
0
Changing AutoNormal -> AutoNormalMessenger
#114
vitkl
opened
2 years ago
0
error using pymc3_loc_model
#113
rue1996
closed
2 years ago
3
getting access to q05_nUMI_factors
#112
Nasrine26
closed
2 years ago
1
error saving results [it is incorrect to use cell name as batch_key]
#109
rue1996
closed
2 years ago
7
error in training regression model [models require unnormalised integer counts as input]
#108
deryu
closed
2 years ago
7
run_regression giving an error
#107
rue1996
closed
2 years ago
1
Multi-GPU training
#106
mehdiborji
opened
2 years ago
8
Various updates related to new pyro version
#105
vitkl
closed
2 years ago
1
Issue installing the latest cell2location
#104
menelson
closed
2 years ago
2
inconsistent tensor dimensions when giving exact cell numbers
#103
carloelle
closed
2 years ago
1
Update readme, tutorial and acknowledgements
#102
vitkl
closed
1 year ago
0
pin_memory option should be explicit in cell2location
#101
carloelle
closed
2 years ago
5
Amortised inference for cell2location (hierarchical messenger guide + aggressive training)
#98
vitkl
closed
2 years ago
0
Update LocationModelWTA.py
#97
AlexanderAivazidis
closed
2 years ago
0
Support for multiplicative effects for arbitrary covariates in the spatial data
#96
vitkl
opened
3 years ago
0
Previous
Next