Benson-Genomics-Lab TRF issues

Benson-Genomics-Lab / TRF

Tandem Repeats Finder: a program to analyze DNA sequences

https://tandem.bu.edu/trf/trf.html

GNU Affero General Public License v3.0

152 stars 26 forks source link

issues

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The TRF(Tandem Repeats Finder, Version 4.09) runs for an excessively long time without any results.

#25 yukaiquan opened 1 week ago
3
Output machine-readable alignment

#24 wiedenhoeft opened 4 months ago
0
large genome bug

#23 zskey-zn opened 5 months ago
1
运行trf 总是在运行一段时间后退出且查看nohup.out发现没有报错。

#22 Blosers opened 5 months ago
5
The difference between trf409.legacylinux64 and trf409.linux64

#21 wpf95 opened 8 months ago
0
sequence size

#20 huangl07 opened 1 year ago
0
Running in multiple fasta files

#19 schlogl2017 opened 1 year ago
0
Non-executable TRF

#18 rnbehm opened 1 year ago
3
Add length of sequence input to .dat file?

#17 tomsauv opened 1 year ago
0
Issue about tandem repeat GAA in FXN gene missed by TRF.

#16 fjmuzengyiheng opened 1 year ago
0
Use Github Actions to build on Linux ARM64

#15 martin-g opened 2 years ago
2
output length of tandem repeats

#14 jorondo1 opened 2 years ago
4
TRF v4.10.0 on miniconda

#13 MaestSi opened 2 years ago
2
trf2bed

#12 jaudall opened 2 years ago
2
longer tandem repeat identification

#11 jbelyeu opened 2 years ago
1
Context dependence of calls for short repeats

#10 plavskin opened 2 years ago
0
Would you please "Inverted Repeats Finder" or open its source?

#9 meng-hhh opened 2 years ago
0
TRF on protein sequence

#8 glopatriello opened 2 years ago
0
Time consuming process

#7 karimi81 opened 2 years ago
4
last four column of the output

#6 gorliver opened 3 years ago
4
Links to 4.09.1 files seem to contain 4.10.0-rc.2

#5 brook-milligan opened 3 years ago
0
exit code 146

#4 grendon opened 3 years ago
0
TRF results file is malformed when input filename is long and more than 120 repeats are found in a batch

#3 FredericBGA opened 3 years ago
0
Installation issue

#2 RobBarringer opened 3 years ago
5
Test suite failures for other architectures than amd64

#1 tillea opened 3 years ago
6