Bioconductor BiocParallel issues

Bioconductor / BiocParallel

Bioconductor facilities for parallel evaluation

https://bioconductor.org/packages/BiocParallel

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issues

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strategy of tasks in MulticoreParam

#260 z5ouyang closed 3 months ago
4
BiocParallel socketConnection error

#259 MeatMeta closed 3 months ago
5
Extremely minor: typo in docs? man/MulticoreParam-class.Rd

#258 adam-cornwell closed 4 months ago
1
BatchtoolsParam fails to propagate errors in bpiterate

#257 DarwinAwardWinner opened 1 year ago
2
BiocParallel for parallelization in BEER: Error and GPU Compatibility

#256 FarzanehRah closed 1 year ago
8
BiocParallel : long vectors are not supported in .C()

#255 YouriTasse closed 1 year ago
5
I meet a error when I use BiocParallel

#254 fadedmeliodas closed 1 year ago
6
remove static messages no longer used by bplapply

#253 LiNk-NY closed 11 months ago
0
BiocParallel errors：could not find function ".OLD_read_block"

#252 alopehba closed 1 year ago
11
"foreach" %in% loadedNamespaces() instead of "package:foreach" %in% search()?

#251 HenrikBengtsson closed 1 year ago
1
move Rmpi to Enhances:

#250 mtmorgan closed 1 year ago
1
Handle worker abort better

#249 mtmorgan opened 1 year ago
1
BiocParallel errors

#248 psjyot closed 1 year ago
4
The running time isn't reduced when using bplapply()?

#247 anglixue closed 1 year ago
3
improve traceback in remote errors

#246 mtmorgan closed 1 year ago
2
Increase depth of traceback beyond `tryCatch()` for bp* functions - possible enhancement

#245 MikeDMorgan closed 1 year ago
1
start TransientMulticoreParam, ensuring clean-up of environments

#244 mtmorgan closed 1 year ago
3
MulticoreParam bplapply unable to restart upon interrupt

#243 gdagstn closed 1 year ago
1
Force evaluation of the function argument

#242 Jiefei-Wang closed 1 year ago
2
Troubles with bplapply within function (using SnowParam on Windows)

#241 DavoSam closed 1 year ago
6
stop.on.error = FALSE for DoParam doesn't work as expected

#240 GiuliaPais closed 1 year ago
2
Nested parallellization question

#239 zeehio closed 1 year ago
6
Performance (speed) degradation in MulticoreParam with default force.G = TRUE

#238 mtmorgan closed 1 year ago
3
Error in serialize(data, node$con, xdr = FALSE) : ignoring SIGPIPE signal

#237 nickhsmith closed 1 year ago
5
update configure.ac to use C++

#236 mtmorgan closed 1 year ago
3
Fix issue 234

#235 Jiefei-Wang closed 1 year ago
2
exported entities are destroyed in caller

#234 vjcitn closed 1 year ago
4
[low-importance] [one-line] Add ORCID identifier

#233 zeehio closed 1 year ago
0
`bpnworkers(SnowParam(x))` is not integer

#232 LTLA closed 1 year ago
0
WISH: Support also SnowParam(type = "PSOCK")

#231 HenrikBengtsson opened 1 year ago
4
parallelly::freeConnections() infers number of non-used connections (not hardcoded based on 128)

#230 HenrikBengtsson closed 1 year ago
10
Let environment variables override `workers = ` argument

#229 mtmorgan closed 1 year ago
7
bpsharememory() generic and bpmapply() efficiency: Avoid passing a copy of the full data to workers

#228 zeehio closed 1 year ago
23
Fix bpmapply performance

#227 zeehio closed 1 year ago
0
@Bioconductor/sweave2rmd: Conversion of Introduction_to_BiocParallel.Rnw to Rmd

#226 phyleria closed 1 year ago
8
Converting Introduction to BiocParallel.rnw to R Markdown

#225 phyleria closed 1 year ago
4
Exclude the internal object when exporting variables from the master

#224 Jiefei-Wang closed 1 year ago
1
Error using conflicted with BiocParallel in R4.2.0

#223 hxin closed 1 year ago
7
Template file for Slurm job submission

#222 mitmurakami closed 1 year ago
1
Errors_Logs_And_Debugging Rnw to Rmd

#221 villafup opened 1 year ago
1
g++ Error installing BiocParallel

#220 lmansilla26 closed 1 year ago
2
Biocparallel batchtoolsparam rmd

#219 villafup opened 1 year ago
1
Updates to vignette and function documentation

#218 DarioS closed 1 year ago
0
For Developers Vignette Section Lacks a Code Example

#217 DarioS closed 1 year ago
1
BiocParallel doesn't propagate warnings

#216 alanocallaghan opened 2 years ago
3
Random_Numbers to Rmd

#215 mcarlsn closed 1 year ago
4
'offset' contains negative indices

#214 TheFirstAdrien closed 2 years ago
1
ERROR: compilation failed for package 'BiocParallel'/g++: command not found

#213 ewelinarubin closed 2 years ago
1
Make 'codetools' a required package?

#212 HenrikBengtsson closed 2 years ago
3
Add the load balancer for evenly distributing the tasks across workers

#211 Jiefei-Wang opened 2 years ago
11