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Bioconductor
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DelayedArray
A unified framework for working transparently with on-disk and in-memory array-like datasets
https://bioconductor.org/packages/DelayedArray
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More unit tests and streamlined matrix multiplication
#68
LTLA
closed
3 years ago
2
Respect sparsity in matrix multiplication
#67
LTLA
closed
3 years ago
0
Prettier showtree formatting
#66
PeteHaitch
closed
4 years ago
1
Subsetting with "missing" arguments
#65
allisonvuong
closed
4 years ago
3
Support native matrix multiplication (among other operations)
#64
LTLA
closed
4 years ago
18
is_sparse doesn't work for lgCMatrix objects
#63
LTLA
closed
4 years ago
3
Support for RleListMatrix (?)
#62
jonocarroll
opened
4 years ago
1
Coercion from DelayedArray to dgCMatrix discards dimnames
#61
LTLA
closed
4 years ago
1
Summing DelayedArray and Matrix
#60
const-ae
closed
4 years ago
2
colsum does not respect factor level ordering
#59
LTLA
closed
4 years ago
1
Get/set AutoBPPARAM in matrix multiplication functions.
#58
LTLA
closed
4 years ago
6
Add row/colsum fallbacks for non-DA/base matrix classes.
#57
LTLA
closed
4 years ago
5
mean(), anyNA(), and members of "Summary" group generic should "untranspose"
#56
hpages
opened
4 years ago
0
`is_pristine()` error
#55
mjsteinbaugh
closed
4 years ago
6
replacing dimnames with identical values demotes >2-dim DelayedArray derivatives into DelayedArray
#54
Liubuntu
closed
4 years ago
4
dimnames setting on a DelayedArray should coerce to character
#53
LTLA
closed
4 years ago
3
Slow matrix multiplication using DelayedArray
#52
kevinwang09
closed
3 years ago
3
why does this package depend on BiocParallel
#51
vjcitn
closed
4 years ago
3
sub-assignment for DelayedArrays doesn't follow base API
#50
sa-lee
closed
4 years ago
2
Feature Request/Help on Applying Linear Models
#49
avalcarcel9
closed
4 years ago
6
type accessor not found, when DelayedArray and Biostrings package are loaded
#48
FelixErnst
closed
5 years ago
2
Reshaping Array
#47
muschellij2
opened
5 years ago
18
Block-processed methods for DelayedArray objects should try to take advantage of the backend-specific methods whenever they can
#46
hpages
opened
5 years ago
0
multiple methods tables found for ‘splitAsList’ when loading DelayedArray
#45
ngolan1
closed
5 years ago
14
NA subscripting
#44
lawremi
opened
5 years ago
0
names on dimnames
#43
lawremi
closed
4 years ago
3
Linear indexing causes trouble when an index is larger than .Machine$integer.max
#42
hpages
closed
4 years ago
1
Re-implementing rowsum/colsum for HDF5Matrix
#41
PeteHaitch
opened
5 years ago
3
Type-preserving alternative to read_block
#40
LTLA
closed
4 years ago
9
Initial support for (t)crossprod methods.
#38
LTLA
closed
5 years ago
1
How to implement a realization backend
#37
hpages
opened
5 years ago
0
Memory issue with subassignment
#36
mikejiang
closed
4 years ago
6
Calling TFSBTools
#35
akhst7
closed
5 years ago
6
Bug in makeCappedVolumeBox() results in zero-column volumn box
#34
PeteHaitch
closed
5 years ago
3
Implementing crossprod and dual-DA %*%
#33
LTLA
closed
3 years ago
9
replacement method [<- support the same subassignment as regular array
#32
mikejiang
closed
5 years ago
3
generic for deep copying
#31
mikejiang
closed
5 years ago
3
unable to change dim
#30
mikejiang
closed
5 years ago
4
DelayedArray backend fails on repeated invocation of devtools::test
#29
sampoll
closed
5 years ago
8
registering `SerialParam()` sets a global preference, but package-specific preference required
#28
mtmorgan
closed
6 years ago
4
possble DelayedArray constructor over `IntegerList` (or other `List`)
#27
Liubuntu
opened
6 years ago
3
Subsetting on DelayedArray objects with list elements fails
#26
Liubuntu
closed
6 years ago
6
show method for >2D arrays load the whole 2d slices (than necessary) in the middle steps
#25
Liubuntu
closed
6 years ago
6
Please consider adding RUnit to Suggests
#24
HenrikBengtsson
closed
6 years ago
2
Strange behaviour when subsetting and coercing to vector
#23
kdkorthauer
closed
6 years ago
1
Error when calling as.matrix() on DelayedMatrix with length > .Machine$integer.max
#22
PeteHaitch
closed
6 years ago
6
Error in extract_array when print the extended backend
#21
mikejiang
closed
6 years ago
6
Help implementing 'parallel' writing to a RealizationSink with BiocParallel
#20
PeteHaitch
opened
6 years ago
4
What about using a seed with "dual layout" i.e. row- and col- oriented?
#19
hpages
closed
4 years ago
2
Support `finite` argument in `range,DelayedArray-method`
#18
PeteHaitch
closed
6 years ago
2
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